* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘plantmix’ ...
** this is package ‘plantmix’ version ‘1.0.3’
** package ‘plantmix’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.3.0-1) 15.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBUAw3q/R.INSTALL32eca66853b198/plantmix/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c init_dummy_file.cpp -o init_dummy_file.o
(cd TMB; /home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript \
--no-save --no-restore compile.R '')
Note: Using Makevars in /home/hornik/.R/Makevars-gcc 
using C++ compiler: ‘g++-15 (Debian 15.3.0-1) 15.3.0’
make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpBUAw3q/R.INSTALL32eca66853b198/plantmix/src/TMB'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include"   -DTMB_EIGEN_DISABLE_WARNINGS   -DTMB_LIB_INIT=R_init_plantmix_TMBExports  -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c plantmix_TMBExports.cpp -o plantmix_TMBExports.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o plantmix_TMBExports.so plantmix_TMBExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpBUAw3q/R.INSTALL32eca66853b198/plantmix/src/TMB'
make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpBUAw3q/R.INSTALL32eca66853b198/plantmix/src/TMB'
make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpBUAw3q/R.INSTALL32eca66853b198/plantmix/src/TMB'
[1] TRUE
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o plantmix.so init_dummy_file.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBUAw3q/R.INSTALL32eca66853b198/plantmix/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBUAw3q/R.INSTALL32eca66853b198/plantmix/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBUAw3q/R.INSTALL32eca66853b198/plantmix/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-plantmix/00new/plantmix/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘plantmix’
    finding HTML links ... done
    CC                                      html  
    LER                                     html  
    RII                                     html  
    RIInet                                  html  
    RY                                      html  
    RYM                                     html  
    RYP                                     html  
    RYT                                     html  
    aaa-plantmix-package                    html  
    estimGRM                                html  
    estimRYMRep                             html  
    estimRYRep                              html  
    fitDBVSBVinter                          html  
    fitGMASMA                               html  
    getDesignBinaryCropMix                  html  
    getDesignBinaryVarMix                   html  
    getMixtureList                          html  
    getMixturesPerGeno                      html  
    imageMat                                html  
    infoCriterion                           html  
    invvec                                  html  
    invvecMixes                             html  
    mixSowingWeight                         html  
    mkAllZSMA                               html  
    mkZGMA                                  html  
    mkZSMA                                  html  
    mkZinterspe                             html  
    nbSeedsToSownInPure                     html  
    normBiasError                           html  
    paramBoot4TMB                           html  
    pivotMixData2Long                       html  
    pivotMixData2Wide                       html  
    plotDesignCropMix                       html  
    plotDesignVarMix                        html  
    plotDiallel                             html  
    rmatnorm                                html  
    simulDBVSBVinter                        html  
    simulGenosDoseStruct                    html  
    summarizeGMASMAs                        html  
    vec                                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (plantmix)