• using R version 4.5.2 Patched (2026-01-31 r89374)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘pkggraph/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘pkggraph’ version ‘0.2.3’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘pkggraph’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... NOTE Problems with news in ‘NEWS.md’: No news entries found.
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
• checking loading without being on the library search path ... [4s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s/25s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] ERROR Running examples in ‘pkggraph-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: get_all_dependencies > ### Title: get_all_dependencies > ### Aliases: get_all_dependencies > > ### ** Examples > > pkggraph::init(local = TRUE) Using 'local' data ... To fetch data from CRAN over internet, run:`pkggraph::init(local = FALSE)` Done! > # general use > pkggraph::get_all_dependencies("mlr") Error: ! `arrange_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `arrange()` instead. ℹ See vignette('programming') for more help Backtrace:     ▆  1. └─pkggraph::get_all_dependencies("mlr")  2. └─dplyr::arrange_(res, "relation")  3. └─dplyr:::lazy_defunct("arrange")  4. └─lifecycle::deprecate_stop(...)  5. └─lifecycle:::deprecate_stop0(msg)  6. └─rlang::cnd_signal(...) Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [5s/6s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘vignette_pkggraph.Rmd’ using rmarkdown Quitting from vignette_pkggraph.Rmd:33-58 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `arrange_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `arrange()` instead. ℹ See vignette('programming') for more help --- Backtrace:     ▆  1. └─pkggraph::get_neighborhood("mlr")  2. ├─dplyr::bind_rows(...)  3. │ └─rlang::list2(...)  4. └─pkggraph::get_all_dependencies(...)  5. └─dplyr::arrange_(res, "relation")  6. └─dplyr:::lazy_defunct("arrange")  7. └─lifecycle::deprecate_stop(...)  8. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vignette_pkggraph.Rmd' failed with diagnostics: `arrange_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `arrange()` instead. ℹ See vignette('programming') for more help --- failed re-building ‘vignette_pkggraph.Rmd’ SUMMARY: processing the following file failed:   ‘vignette_pkggraph.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs, 1 NOTE