* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘piglet’ ...
** this is package ‘piglet’ version ‘1.2.0’
** package ‘piglet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-12) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDkQAX5/R.INSTALL2173f67637e889/piglet/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RccpAlleleDiff.cpp -o RccpAlleleDiff.o
RccpAlleleDiff.cpp:15:93: note: ‘#pragma message: OpenMP not supported. Compilation will proceed without parallel execution.’
   15 | #pragma message("OpenMP not supported. Compilation will proceed without parallel execution.")
      |                                                                                             ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RccpFunctions.cpp -o RccpFunctions.o
RccpFunctions.cpp:15:93: note: ‘#pragma message: OpenMP not supported. Compilation will proceed without parallel execution.’
   15 | #pragma message("OpenMP not supported. Compilation will proceed without parallel execution.")
      |                                                                                             ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o piglet.so RccpAlleleDiff.o RccpFunctions.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDkQAX5/R.INSTALL2173f67637e889/piglet/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDkQAX5/R.INSTALL2173f67637e889/piglet/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDkQAX5/R.INSTALL2173f67637e889/piglet/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-piglet/00new/piglet/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘piglet’
    finding HTML links ... done
    GermlineCluster                         html  
    HVGERM                                  html  
    alleleClusterNames                      html  
    allele_cluster_table                    html  
    allele_diff                             html  
    allele_diff_indices                     html  
    allele_diff_indices_parallel            html  
    allele_diff_indices_parallel2           html  
    allele_diff_strings                     html  
    allele_threshold_table                  html  
    artificialFRW1Germline                  html  
    assignAlleleClusters                    html  
    compute_distance                        html  
    detect_communities_leiden               html  
    distance_to_graph                       html  
    dot-create_iuis_labels_with_markers     html  
    dot-getNClusters                        html  
    extractASCTable                         html  
    generateReferenceSet                    html  
    germlineASC                             html  
    hv_functionality                        html  
    igClust                                 html  
    igDistance                              html  
    ighvClust                               html  
    ighvDistance                            html  
    inferAlleleClusters                     html  
    inferGenotypeAllele                     html  
    inferGenotypeAllele_asc                 html  
    insert_gaps2_vec                        html  
    new_germline_cluster                    html  
    optimize_resolution                     html  
    piglet-package                          html  
    piglet                                  html  
    pipe                                    html  
    plot.GermlineCluster                    html  
    plotAlleleCluster                       html  
    plotClusterComparison                   html  
    plotCommunityNetwork                    html  
    plotSilhouetteOptimization              html  
    plotTruncatedTree                       html  
    print.GermlineCluster                   html  
    recentAlleleClusters                    html  
    summary.GermlineCluster                 html  
    zenodoArchive                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (piglet)