* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘picante’ ...
** this is package ‘picante’ version ‘1.8.2’
** package ‘picante’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxndWkW/R.INSTALL39f3ac658aa503/picante/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c picante.c -o picante.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c picante_init.c -o picante_init.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o picante.so picante.o picante_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxndWkW/R.INSTALL39f3ac658aa503/picante/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxndWkW/R.INSTALL39f3ac658aa503/picante/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxndWkW/R.INSTALL39f3ac658aa503/picante/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-picante/00new/picante/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘picante’
    finding HTML links ... done
    IvesGodfray                             html  
    Kcalc                                   html  
    color.plot.phylo                        html  
    comdist                                 html  
    comdistnt                               html  
    comm.phylo.cor                          html  
    comm.phylo.qr                           html  
    cor.table                               html  
    data.checking                           html  
    evol.distinct                           html  
    expected.pd                             html  
    matrix2sample                           html  
    mntd                                    html  
    mpd                                     html  
    multiPhylosignal                        html  
    pblm                                    html  
    pcd                                     html  
    pd                                      html  
    phyEstimate                             html  
    phylocom                                html  
    phylosignal                             html  
    phylosor                                html  
    phylosor.rnd                            html  
    phylostruct                             html  
    picante-package                         html  
    pruning                                 html  
    psd                                     html  
    randomizeSample                         html  
    raoD                                    html  
    readsample                              html  
    sample2matrix                           html  
    ses.mntd                                html  
    ses.mpd                                 html  
    ses.pd                                  html  
    specaccum.psr                           html  
    species.dist                            html  
    sppregs                                 html  
    tax.distinctiveness                     html  
    traitgram                               html  
    unifrac                                 html  
    utility                                 html  
    writesample                             html  
    writetraits                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (picante)