* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘phylotypr’ ...
** this is package ‘phylotypr’ version ‘0.1.1’
** package ‘phylotypr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOOxSK8/R.INSTALL19051269182018/phylotypr/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kmers.cpp -o kmers.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o phylotypr.so RcppExports.o kmers.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOOxSK8/R.INSTALL19051269182018/phylotypr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOOxSK8/R.INSTALL19051269182018/phylotypr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOOxSK8/R.INSTALL19051269182018/phylotypr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-phylotypr/00new/phylotypr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘phylotypr’
    finding HTML links ... done
    build_kmer_database                     html  
    classify_sequence                       html  
    filter_taxonomy                         html  
    phylotypr_example                       html  
    print_taxonomy                          html  
    read_fasta                              html  
    read_taxonomy                           html  
    trainset9_rdp                           html  
    write_fasta                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phylotypr)