* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘phreeqc’ ...
** package ‘phreeqc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpPD1mli/R.INSTALL1d7f3b2ac823/phreeqc/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CSelectedOutput.cpp -o CSelectedOutput.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c IPhreeqcLib.cpp -o IPhreeqcLib.o
IPhreeqcLib.cpp: In function ‘void OutputAccumulatedLines(int)’:
IPhreeqcLib.cpp:716:27: warning: unused variable ‘err_msg’ [-Wunused-variable]
716 | static const char err_msg[] = "OutputAccumulatedLines: Invalid instance id.\n";
| ^~~~~~~
IPhreeqcLib.cpp: In function ‘void OutputErrorString(int)’:
IPhreeqcLib.cpp:731:27: warning: unused variable ‘err_msg’ [-Wunused-variable]
731 | static const char err_msg[] = "OutputErrorString: Invalid instance id.\n";
| ^~~~~~~
IPhreeqcLib.cpp: In function ‘void OutputWarningString(int)’:
IPhreeqcLib.cpp:746:27: warning: unused variable ‘err_msg’ [-Wunused-variable]
746 | static const char err_msg[] = "OutputWarningString: Invalid instance id.\n";
| ^~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c IPhreeqc.cpp -o IPhreeqc.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R.cpp -o R.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Var.c -o Var.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/advection.cpp -o phreeqcpp/advection.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/basicsubs.cpp -o phreeqcpp/basicsubs.o
phreeqcpp/basicsubs.cpp: In member function ‘double Phreeqc::calc_surface_charge(const char*)’:
phreeqcpp/basicsubs.cpp:844:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
844 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp: In member function ‘double Phreeqc::diff_layer_total(const char*, const char*)’:
phreeqcpp/basicsubs.cpp:898:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
898 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:934:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
934 | if (j >= count_unknowns)
| ~~^~~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:1140:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1140 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp: In member function ‘double Phreeqc::equi_phase(const char*)’:
phreeqcpp/basicsubs.cpp:1182:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1182 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:1195:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1195 | if (j == count_unknowns)
| ~~^~~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp: In member function ‘double Phreeqc::equi_phase_delta(const char*)’:
phreeqcpp/basicsubs.cpp:1227:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1227 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:1240:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1240 | if (j == count_unknowns)
| ~~^~~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp: In member function ‘double Phreeqc::surf_total(const char*, const char*)’:
phreeqcpp/basicsubs.cpp:2249:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2249 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:2264:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2264 | if (j >= count_unknowns)
| ~~^~~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp: In member function ‘double Phreeqc::surf_total_no_redox(const char*, const char*)’:
phreeqcpp/basicsubs.cpp:2381:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2381 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:2399:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2399 | if (j >= count_unknowns)
| ~~^~~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:2434:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2434 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp: In member function ‘double Phreeqc::total(const char*)’:
phreeqcpp/basicsubs.cpp:2498:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2498 | (i < (int)master.size() && master[i]->elt->primary == master_ptr);
| ~~^~~~~~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp: In member function ‘int Phreeqc::system_total_elt(const char*)’:
phreeqcpp/basicsubs.cpp:3275:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3275 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3325:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3325 | for (k = 0; k < count_unknowns; k++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3358:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3358 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3380:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3380 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3397:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3397 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3433:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3433 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3471:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3471 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp: In member function ‘int Phreeqc::system_total_elt_secondary(const char*)’:
phreeqcpp/basicsubs.cpp:3521:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3521 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3566:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3566 | for (k = 0; k < count_unknowns; k++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3590:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3590 | for (l = 0; l < count_elts; l++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3607:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3607 | if (l >= count_elts)
| ~~^~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3626:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3626 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3643:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3643 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp:3680:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3680 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/basicsubs.cpp: In member function ‘double Phreeqc::solution_sum_secondary(const char*)’:
phreeqcpp/basicsubs.cpp:3807:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3807 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/ChartHandler.cpp -o phreeqcpp/ChartHandler.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/ChartObject.cpp -o phreeqcpp/ChartObject.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/cl1.cpp -o phreeqcpp/cl1.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/CurveObject.cpp -o phreeqcpp/CurveObject.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/cvdense.cpp -o phreeqcpp/cvdense.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/cvode.cpp -o phreeqcpp/cvode.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/cxxKinetics.cpp -o phreeqcpp/cxxKinetics.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/cxxMix.cpp -o phreeqcpp/cxxMix.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/dense.cpp -o phreeqcpp/dense.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Dictionary.cpp -o phreeqcpp/Dictionary.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/dumper.cpp -o phreeqcpp/dumper.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Exchange.cpp -o phreeqcpp/Exchange.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/ExchComp.cpp -o phreeqcpp/ExchComp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/GasComp.cpp -o phreeqcpp/GasComp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/gases.cpp -o phreeqcpp/gases.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/GasPhase.cpp -o phreeqcpp/GasPhase.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/input.cpp -o phreeqcpp/input.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/integrate.cpp -o phreeqcpp/integrate.o
phreeqcpp/integrate.cpp: In member function ‘int Phreeqc::calc_all_g()’:
phreeqcpp/integrate.cpp:43:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
43 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/integrate.cpp: In member function ‘void Phreeqc::polint(double*, double*, int, double, double*, double*)’:
phreeqcpp/integrate.cpp:334:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
334 | for (size_t i = 1; i <= n - m; i++)
| ~~^~~~~~~~
phreeqcpp/integrate.cpp: In member function ‘int Phreeqc::calc_init_g()’:
phreeqcpp/integrate.cpp:461:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
461 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/integrate.cpp: In member function ‘int Phreeqc::initial_surface_water()’:
phreeqcpp/integrate.cpp:572:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
572 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/integrate.cpp:586:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
586 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/integrate.cpp:617:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
617 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/integrate.cpp:645:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
645 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/integrate.cpp:660:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
660 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/integrate.cpp: In member function ‘int Phreeqc::calc_all_donnan()’:
phreeqcpp/integrate.cpp:751:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
751 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/integrate.cpp: In member function ‘int Phreeqc::calc_init_donnan()’:
phreeqcpp/integrate.cpp:938:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
938 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/inverse.cpp -o phreeqcpp/inverse.o
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::setup_inverse(inverse*)’:
phreeqcpp/inverse.cpp:284:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
284 | for (i = 0; i < max_row_count; i++)
| ~~^~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
302 | for (i = 0; i < count_optimize; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:329:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
329 | for (i = 0; i < inv_ptr->elts.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:341:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
341 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:369:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
369 | if (i == (inv_ptr->count_solns - 1))
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:467:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
467 | for (i = 0; i < inv_ptr->elts.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:524:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
524 | for (i = 0; i < inv_ptr->elts.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:527:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
527 | for (j = 0; j < inv_ptr->count_solns; j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:529:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
529 | if (j < (inv_ptr->count_solns - 1))
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:550:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
550 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:563:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
563 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:565:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
565 | for (j = 0; j < inv_ptr->isotope_unknowns.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:582:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
582 | for (j = 0; j < inv_ptr->isotopes.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:596:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
596 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:599:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
599 | if (i < inv_ptr->count_solns - 1)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:632:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
632 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:636:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
636 | for (j = 0; j < inv_ptr->elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:662:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
662 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:701:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
701 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:703:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
703 | for (j = 0; j < inv_ptr->elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:729:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
729 | for (k = 0; k < count_rows; k++)
| ~~^~~~~~~~~~~~
phreeqcpp/inverse.cpp:810:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
810 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:866:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
866 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:869:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
869 | for (j = 0; j < inv_ptr->isotope_unknowns.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:938:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
938 | for (i = 0; i < (inv_ptr->count_solns - 1); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:945:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
945 | for (i = 0; i < max_column_count; i++)
| ~~^~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:954:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
954 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:958:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
958 | for (i = 0; i < count_rows; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/inverse.cpp:962:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
962 | for (j = 0; j < count_unknowns + 1; j++)
| ~~^~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::save_minimal(long unsigned int)’:
phreeqcpp/inverse.cpp:1513:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1513 | if (count_minimal >= max_minimal)
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::save_good(long unsigned int)’:
phreeqcpp/inverse.cpp:1531:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1531 | if (count_good >= max_good)
| ~~~~~~~~~~~^~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::save_bad(long unsigned int)’:
phreeqcpp/inverse.cpp:1549:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1549 | if (count_bad >= max_bad)
| ~~~~~~~~~~^~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::print_model(inverse*)’:
phreeqcpp/inverse.cpp:1663:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1663 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:1708:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1708 | for (j = 0; j < inv_ptr->elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:1758:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1758 | for (j = 0; j < inv_ptr->isotope_unknowns.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:1898:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1898 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:1923:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1923 | for (i = 0; i < inv_ptr->count_solns - 1; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::punch_model_heading(inverse*)’:
phreeqcpp/inverse.cpp:2061:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2061 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::punch_model(inverse*)’:
phreeqcpp/inverse.cpp:2150:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2150 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::range(inverse*, long unsigned int)’:
phreeqcpp/inverse.cpp:2355:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2355 | for (i = 0; i < inv_ptr->count_solns + inv_ptr->phases.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:2357:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2357 | if (inv_ptr->count_solns == i + 1)
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::shrink(inverse*, double*, double*, int*, int*, int*, int*, long unsigned int, double*, int*, int*)’:
phreeqcpp/inverse.cpp:2537:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_phases>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2537 | for (i = 0; i < inv_ptr->phases.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:2545:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2545 | for (j = 0; j < inv_ptr->isotopes.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:2557:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2557 | for (i = 0; i < (inv_ptr->count_solns - 1); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:2563:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2563 | for (j = 0; j < inv_ptr->elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:2612:29: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2612 | if (cur_col == col_back_l[i])
| ~~~~~~~~^~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::check_solns(inverse*)’:
phreeqcpp/inverse.cpp:2791:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2791 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:2850:31: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2850 | if (j == i)
| ~~^~~~
phreeqcpp/inverse.cpp: In member function ‘bool Phreeqc::test_cl1_solution()’:
phreeqcpp/inverse.cpp:3077:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3077 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::carbon_derivs(inverse*)’:
phreeqcpp/inverse.cpp:3116:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3116 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3130:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3130 | for (j = 0; j < inv_ptr->elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::isotope_balance_equation(inverse*, int, int)’:
phreeqcpp/inverse.cpp:3293:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3293 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3295:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3295 | if (i == (inv_ptr->count_solns - 1))
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3332:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3332 | for (k = 0; k < inv_ptr->elts.size(); k++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3354:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3354 | for (k = 0; k < inv_ptr->isotope_unknowns.size(); k++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3374:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_phases>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3374 | for (i = 0; i < inv_ptr->phases.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3379:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3379 | for (j = 0; j < inv_ptr->phases[i].isotopes.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘bool Phreeqc::set_isotope_unknowns(inverse*)’:
phreeqcpp/inverse.cpp:3421:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3421 | for (i = 0; i < inv_ptr->isotopes.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::check_isotopes(inverse*)’:
phreeqcpp/inverse.cpp:3502:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3502 | for (j = 0; j < inv_ptr->count_solns; j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3511:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3511 | for (i = 0; i < inv_ptr->isotopes.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3566:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3566 | for (i = 0; i < inv_ptr->i_u.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3589:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3589 | if (j < inv_ptr->i_u[i].uncertainties.size()
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3660:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_phases>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3660 | for (j = 0; j < inv_ptr->phases.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3662:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3662 | for (i = 0; i < inv_ptr->isotopes.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3667:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3667 | for (k = 0; k < inv_ptr->phases[j].isotopes.size(); k++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::write_optimize_names(inverse*)’:
phreeqcpp/inverse.cpp:3828:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3828 | for (j = 0; j < inv_ptr->elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3830:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3830 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3843:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3843 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3859:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3859 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3861:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3861 | for (j = 0; j < inv_ptr->isotope_unknowns.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3874:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_phases>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3874 | for (i = 0; i < inv_ptr->phases.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:3876:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3876 | for (j = 0; j < inv_ptr->isotopes.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp: In member function ‘int Phreeqc::dump_netpath_pat(inverse*)’:
phreeqcpp/inverse.cpp:4274:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4274 | for (i = 0; i < inv_ptr->count_solns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:4304:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4304 | for (j = 0; j < inv_ptr->elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:4329:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4329 | for (j = 0; j < inv_ptr->isotope_unknowns.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:4732:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4732 | for (i = 0; i < count_current_solutions; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:4745:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4745 | for (j = 0; j < inv_ptr->elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:4774:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4774 | for (j = 0; j < inv_ptr->isotopes.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:4939:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4939 | for (k = 0; k < inv_ptr->phases[i].isotopes.size(); k++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/inverse.cpp:5025:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5025 | for (i = 0; i < count_current_solutions - 1; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/ISolutionComp.cpp -o phreeqcpp/ISolutionComp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/ISolution.cpp -o phreeqcpp/ISolution.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/isotopes.cpp -o phreeqcpp/isotopes.o
phreeqcpp/isotopes.cpp: In member function ‘int Phreeqc::calculate_values()’:
phreeqcpp/isotopes.cpp:1097:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<calculate_value*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1097 | for (j = 0; j < calculate_value.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Keywords.cpp -o phreeqcpp/Keywords.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/KineticsComp.cpp -o phreeqcpp/KineticsComp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/kinetics.cpp -o phreeqcpp/kinetics.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/mainsubs.cpp -o phreeqcpp/mainsubs.o
phreeqcpp/mainsubs.cpp: In member function ‘int Phreeqc::xpp_assemblage_save(int)’:
phreeqcpp/mainsubs.cpp:1216:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1216 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/mainsubs.cpp: In member function ‘int Phreeqc::xsurface_save(int)’:
phreeqcpp/mainsubs.cpp:1453:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1453 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/mainsubs.cpp: In member function ‘int Phreeqc::copy_entities()’:
phreeqcpp/mainsubs.cpp:1858:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1858 | for (size_t i = copy_solution.start[j]; i <= copy_solution.end[j]; i++)
phreeqcpp/mainsubs.cpp:1860:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1860 | if (i == copy_solution.n_user[j])
phreeqcpp/mainsubs.cpp:1872:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1872 | for (size_t i = copy_pp_assemblage.start[j]; i <= copy_pp_assemblage.end[j]; i++)
phreeqcpp/mainsubs.cpp:1874:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1874 | if (i == copy_pp_assemblage.n_user[j])
phreeqcpp/mainsubs.cpp:1886:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1886 | for (size_t i = copy_reaction.start[j]; i <= copy_reaction.end[j]; i++)
phreeqcpp/mainsubs.cpp:1888:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1888 | if (i == copy_reaction.n_user[j])
phreeqcpp/mainsubs.cpp:1900:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1900 | for (size_t i = copy_mix.start[j]; i <= copy_mix.end[j]; i++)
phreeqcpp/mainsubs.cpp:1902:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1902 | if (i != copy_mix.n_user[j])
phreeqcpp/mainsubs.cpp:1915:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1915 | for (size_t i = copy_exchange.start[j]; i <= copy_exchange.end[j]; i++)
phreeqcpp/mainsubs.cpp:1917:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1917 | if (i == copy_exchange.n_user[j]) continue;
phreeqcpp/mainsubs.cpp:1928:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1928 | for (size_t i = copy_surface.start[j]; i <= copy_surface.end[j]; i++)
phreeqcpp/mainsubs.cpp:1930:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1930 | if (i == copy_surface.n_user[j])
phreeqcpp/mainsubs.cpp:1942:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1942 | for (size_t i = copy_temperature.start[j]; i <= copy_temperature.end[j]; i++)
phreeqcpp/mainsubs.cpp:1944:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1944 | if (i != copy_temperature.n_user[j])
phreeqcpp/mainsubs.cpp:1957:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1957 | for (size_t i = copy_pressure.start[j]; i <= copy_pressure.end[j]; i++)
phreeqcpp/mainsubs.cpp:1959:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1959 | if (i != copy_pressure.n_user[j])
phreeqcpp/mainsubs.cpp:1972:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1972 | for (size_t i = copy_gas_phase.start[j]; i <= copy_gas_phase.end[j]; i++)
phreeqcpp/mainsubs.cpp:1974:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1974 | if (i == copy_gas_phase.n_user[j])
phreeqcpp/mainsubs.cpp:1986:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1986 | for (size_t i = copy_kinetics.start[j]; i <= copy_kinetics.end[j]; i++)
phreeqcpp/mainsubs.cpp:1988:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
1988 | if (i == copy_kinetics.n_user[j])
phreeqcpp/mainsubs.cpp:2000:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
2000 | for (size_t i = copy_ss_assemblage.start[j]; i <= copy_ss_assemblage.end[j]; i++)
phreeqcpp/mainsubs.cpp:2002:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
2002 | if (i == copy_ss_assemblage.n_user[j])
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/model.cpp -o phreeqcpp/model.o
phreeqcpp/model.cpp: In member function ‘int Phreeqc::check_residuals()’:
phreeqcpp/model.cpp:291:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
291 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘int Phreeqc::ineq(int)’:
phreeqcpp/model.cpp:972:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
972 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1010:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1010 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1017:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1017 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1021:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1021 | for (j = 0; j < count_unknowns + 1; j++)
| ~~^~~~~~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1034:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1034 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1045:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1045 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1085:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1085 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1112:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1112 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1137 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1192:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1192 | for (j = 0; j < count_unknowns + 1; j++)
| ~~^~~~~~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1254:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1254 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1327:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1327 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1350:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1350 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1408:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1408 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1416:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1416 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1443:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1443 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1480:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1480 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1498:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1498 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1542:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1542 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1642:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1642 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1650:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1650 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1675:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1675 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1856:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1856 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1860:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1860 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1893:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1893 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘int Phreeqc::jacobian_sums()’:
phreeqcpp/model.cpp:1937:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1937 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1941:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1941 | for (i = 1; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:1975:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1975 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:2006:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2006 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:2024:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:2050:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2050 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:2059:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2059 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:2077:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2077 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:2086:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2086 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘int Phreeqc::mb_sums()’:
phreeqcpp/model.cpp:2117:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2117 | for (k = 0; k < count_unknowns; k++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘int Phreeqc::reset()’:
phreeqcpp/model.cpp:2986:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2986 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:3121:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3121 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:3140:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3140 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:3155:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3155 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:3170:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3170 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:3309:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3309 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:3316:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3316 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:3335:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3335 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:3743:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3743 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘int Phreeqc::residuals()’:
phreeqcpp/model.cpp:3798:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3798 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘int Phreeqc::initial_guesses()’:
phreeqcpp/model.cpp:4619:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4619 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘int Phreeqc::revise_guesses()’:
phreeqcpp/model.cpp:4717:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4717 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:4730:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4730 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘int Phreeqc::sum_species()’:
phreeqcpp/model.cpp:4959:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4959 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘int Phreeqc::numerical_jacobian()’:
phreeqcpp/model.cpp:5616:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5616 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:5663:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5663 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:5675:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5675 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp:5710:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5710 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘void Phreeqc::set_inert_moles()’:
phreeqcpp/model.cpp:5815:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5815 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/model.cpp: In member function ‘void Phreeqc::unset_inert_moles()’:
phreeqcpp/model.cpp:5834:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5834 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/NameDouble.cpp -o phreeqcpp/NameDouble.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/NumKeyword.cpp -o phreeqcpp/NumKeyword.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/nvector.cpp -o phreeqcpp/nvector.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/nvector_serial.cpp -o phreeqcpp/nvector_serial.o
phreeqcpp/nvector_serial.cpp: In function ‘void N_VPrint_Serial(N_Vector)’:
phreeqcpp/nvector_serial.cpp:849:21: warning: variable ‘N’ set but not used [-Wunused-but-set-variable]
849 | integertype N;
| ^
phreeqcpp/nvector_serial.cpp:850:19: warning: variable ‘xd’ set but not used [-Wunused-but-set-variable]
850 | realtype *xd;
| ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/parse.cpp -o phreeqcpp/parse.o
phreeqcpp/parse.cpp: In member function ‘int Phreeqc::parse_eq(char*, std::vector<elt_list>&, int)’:
phreeqcpp/parse.cpp:156:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
156 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/parse.cpp: In member function ‘int Phreeqc::check_eqn(int)’:
phreeqcpp/parse.cpp:212:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
212 | for (i = 0; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/parse.cpp:238:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
238 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/parse.cpp: In member function ‘int Phreeqc::get_elts_in_species(const char**, double)’:
phreeqcpp/parse.cpp:605:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
605 | if (count_elts >= (int)elt_list.size())
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/parse.cpp:619:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
619 | if (count_elts >= (int)elt_list.size())
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/parse.cpp: In member function ‘int Phreeqc::get_secondary_in_species(const char**, double)’:
phreeqcpp/parse.cpp:872:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
872 | if (count_elts >= (int)elt_list.size())
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Parser.cpp -o phreeqcpp/Parser.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/PBasic.cpp -o phreeqcpp/PBasic.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/phqalloc.cpp -o phreeqcpp/phqalloc.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Phreeqc.cpp -o phreeqcpp/Phreeqc.o
phreeqcpp/Phreeqc.cpp: In member function ‘void Phreeqc::InternalCopy(const Phreeqc*)’:
phreeqcpp/Phreeqc.cpp:1683:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<calculate_value*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1683 | for (int i = 0; i < pSrc->calculate_value.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/PHRQ_base.cpp -o phreeqcpp/PHRQ_base.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/PHRQ_io.cpp -o phreeqcpp/PHRQ_io.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/PHRQ_io_output.cpp -o phreeqcpp/PHRQ_io_output.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/pitzer.cpp -o phreeqcpp/pitzer.o
phreeqcpp/pitzer.cpp: In member function ‘int Phreeqc::pitzer_initial_guesses()’:
phreeqcpp/pitzer.cpp:1736:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1736 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/pitzer.cpp: In member function ‘int Phreeqc::pitzer_revise_guesses()’:
phreeqcpp/pitzer.cpp:1839:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1839 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/pitzer.cpp:1852:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1852 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/pitzer.cpp: In member function ‘int Phreeqc::jacobian_pz()’:
phreeqcpp/pitzer.cpp:1986:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1986 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/pitzer.cpp:1993:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1993 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/pitzer.cpp:2072:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2072 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/pitzer.cpp:2094:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2094 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/pitzer.cpp: In member function ‘int Phreeqc::check_gammas_pz()’:
phreeqcpp/pitzer.cpp:2448:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2448 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/pitzer_structures.cpp -o phreeqcpp/pitzer_structures.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/PPassemblageComp.cpp -o phreeqcpp/PPassemblageComp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/PPassemblage.cpp -o phreeqcpp/PPassemblage.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/prep.cpp -o phreeqcpp/prep.o
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::prep()’:
phreeqcpp/prep.cpp:92:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
92 | for (int j = 0; j < max_unknowns; j++)
| ~~^~~~~~~~~~~~~~
phreeqcpp/prep.cpp:115:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
115 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::quick_setup()’:
phreeqcpp/prep.cpp:197:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
197 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:261:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
261 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:302:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
302 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:309:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
309 | for (; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::build_gas_phase()’:
phreeqcpp/prep.cpp:408:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
408 | for (int j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:455:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
455 | for (int j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::build_ss_assemblage()’:
phreeqcpp/prep.cpp:651:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
651 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:756:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
756 | for (int j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:815:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
815 | for (int k = 0; k < count_unknowns; k++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::build_jacobian_sums(int)’:
phreeqcpp/prep.cpp:905:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
905 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:927:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
927 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:971:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
971 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::build_model()’:
phreeqcpp/prep.cpp:1190:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1190 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:1250:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1250 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::build_pure_phases()’:
phreeqcpp/prep.cpp:1363:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1363 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:1379:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1379 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:1430:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1430 | for (int j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:1496:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1496 | for (int k = 0; k < count_unknowns; k++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::build_solution_phase_boundaries()’:
phreeqcpp/prep.cpp:1539:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1539 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:1566:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1566 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::build_species_list(int)’:
phreeqcpp/prep.cpp:1622:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1622 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:1644:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1644 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:1662:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1662 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘std::vector<master*> Phreeqc::get_list_master_ptrs(const char*, master*)’:
phreeqcpp/prep.cpp:1983:19: warning: variable ‘count_list’ set but not used [-Wunused-but-set-variable]
1983 | int j, l, count_list;
| ^~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::inout()’:
phreeqcpp/prep.cpp:2068:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2068 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::mb_for_species_aq(int)’:
phreeqcpp/prep.cpp:2227:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2227 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:2245:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2245 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::mb_for_species_ex(int)’:
phreeqcpp/prep.cpp:2350:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2350 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::mb_for_species_surf(int)’:
phreeqcpp/prep.cpp:2441:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2441 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::resetup_master()’:
phreeqcpp/prep.cpp:2580:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2580 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:2585:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<master*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2585 | for (j = 0; j < x[i]->master.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::write_mass_action_eqn_x(int)’:
phreeqcpp/prep.cpp:2657:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2657 | for (i = 1; i < count_rxn_orig; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::add_potential_factor()’:
phreeqcpp/prep.cpp:2725:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2725 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:2749:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2749 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::add_cd_music_factors(int)’:
phreeqcpp/prep.cpp:2823:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2823 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:2842:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2842 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::add_surface_charge_balance()’:
phreeqcpp/prep.cpp:2951:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2951 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:2959:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2959 | if (i >= count_elts)
| ~~^~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::add_cd_music_charge_balances(int)’:
phreeqcpp/prep.cpp:3018:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3018 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:3026:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3026 | if (i >= count_elts || master_ptr == NULL)
| ~~^~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::setup_surface()’:
phreeqcpp/prep.cpp:3527:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3527 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:3532:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3532 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:3589:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3589 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:3594:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3594 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘unknown* Phreeqc::find_surface_charge_unknown(std::string&, int)’:
phreeqcpp/prep.cpp:3661:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3661 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::adjust_setup_pure_phases()’:
phreeqcpp/prep.cpp:4105:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4105 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::adjust_setup_solution()’:
phreeqcpp/prep.cpp:4501:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4501 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::setup_unknowns()’:
phreeqcpp/prep.cpp:4651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4651 | for (i = 0; i < max_unknowns; i++)
| ~~^~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::switch_bases()’:
phreeqcpp/prep.cpp:4858:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4858 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::write_mb_eqn_x()’:
phreeqcpp/prep.cpp:5057:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5057 | for (i = 1; i < count_rxn_orig; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::write_mb_for_species_list(int)’:
phreeqcpp/prep.cpp:5131:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5131 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:5149:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5149 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:5153:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5153 | if (count_elts >= (int)elt_list.size())
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::write_phase_sys_total(int)’:
phreeqcpp/prep.cpp:5188:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5188 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:5201:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5201 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/prep.cpp:5205:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5205 | if (count_elts >= (int)elt_list.size())
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::check_same_model()’:
phreeqcpp/prep.cpp:5694:49: warning: comparison of integer expressions of different signedness: ‘std::vector<phase*>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5694 | if (last_model.gas_phase.size() != (int)gas_phase_ptr->Get_gas_comps().size())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:5722:53: warning: comparison of integer expressions of different signedness: ‘std::vector<const char*>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5722 | if (last_model.ss_assemblage.size() != (int) use.Get_ss_assemblage_ptr()->Get_SSs().size())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:5744:53: warning: comparison of integer expressions of different signedness: ‘std::vector<phase*>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5744 | if (last_model.pp_assemblage.size() != (int) pp_assemblage_ptr->Get_pp_assemblage_comps().size())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:5783:52: warning: comparison of integer expressions of different signedness: ‘std::vector<const char*>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5783 | if (last_model.surface_comp.size() != (int) use.Get_surface_ptr()->Get_surface_comps().size())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:5785:54: warning: comparison of integer expressions of different signedness: ‘std::vector<const char*>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5785 | if (last_model.surface_charge.size() != (int) use.Get_surface_ptr()->Get_surface_charges().size())
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::build_min_exch()’:
phreeqcpp/prep.cpp:5949:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5949 | for (jj = 0; jj < count_elts; jj++)
| ~~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::build_min_surface()’:
phreeqcpp/prep.cpp:6059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6059 | if (j < count_unknowns - 1 && x[(size_t)j + 1]->type == SURFACE_CB)
| ~~^~~~~~~~~~~~~~~~~~~~
phreeqcpp/prep.cpp:6079:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6079 | for (int jj = 0; jj < count_elts; jj++)
| ~~~^~~~~~~~~~~~
phreeqcpp/prep.cpp: In member function ‘int Phreeqc::setup_related_surface()’:
phreeqcpp/prep.cpp:6155:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6155 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Pressure.cpp -o phreeqcpp/Pressure.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/print.cpp -o phreeqcpp/print.o
phreeqcpp/print.cpp: In member function ‘int Phreeqc::set_pr_in_false()’:
phreeqcpp/print.cpp:67:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
67 | for (int i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp: In member function ‘int Phreeqc::print_diffuse_layer(cxxSurfaceCharge*)’:
phreeqcpp/print.cpp:241:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
241 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp:251:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
251 | if (j >= count_unknowns)
| ~~^~~~~~~~~~~~~~~~~
phreeqcpp/print.cpp:277:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
277 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp:349:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
349 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/print.cpp: In member function ‘int Phreeqc::print_eh()’:
phreeqcpp/print.cpp:409:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
409 | for (j = 1; j < count_trxn; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/print.cpp: In member function ‘int Phreeqc::print_saturation_indices()’:
phreeqcpp/print.cpp:1273:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1273 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp: In member function ‘int Phreeqc::print_pp_assemblage()’:
phreeqcpp/print.cpp:1326:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1326 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp: In member function ‘int Phreeqc::print_surface()’:
phreeqcpp/print.cpp:1579:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1579 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp:1722:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1722 | for (int k = j - 1; k < count_unknowns; k++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp: In member function ‘int Phreeqc::print_surface_cd_music()’:
phreeqcpp/print.cpp:1861:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1861 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp:2019:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2019 | for (int k = j - 1; k < count_unknowns; k++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp: In member function ‘int Phreeqc::print_totals()’:
phreeqcpp/print.cpp:2104:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2104 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/print.cpp: In member function ‘int Phreeqc::punch_pp_assemblage()’:
phreeqcpp/print.cpp:2808:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2808 | for (int j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Reaction.cpp -o phreeqcpp/Reaction.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/ReadClass.cpp -o phreeqcpp/ReadClass.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/read.cpp -o phreeqcpp/read.o
phreeqcpp/read.cpp: In member function ‘int Phreeqc::read_exchange_species()’:
phreeqcpp/read.cpp:736:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
736 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/read.cpp: In member function ‘int Phreeqc::read_inv_isotopes(inverse*, const char*)’:
phreeqcpp/read.cpp:1699:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1699 | for (i = 0; i < inverse_ptr->isotopes.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/read.cpp:1704:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1704 | if (i == inverse_ptr->isotopes.size())
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/read.cpp: In member function ‘int Phreeqc::read_phases()’:
phreeqcpp/read.cpp:3735:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3735 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/read.cpp: In member function ‘int Phreeqc::read_species()’:
phreeqcpp/read.cpp:5598:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
5598 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/read.cpp: In member function ‘int Phreeqc::read_surface_species()’:
phreeqcpp/read.cpp:6219:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6219 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/read.cpp: In member function ‘int Phreeqc::read_advection()’:
phreeqcpp/read.cpp:7296:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
7296 | for (size_t i = 0; i < count_ad_cells; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/read.cpp:7315:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
7315 | for (size_t i = 0; i < count_ad_cells; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/read.cpp:7325:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
7325 | for (size_t i = 0; i < count_ad_cells; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/read.cpp:7344:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
7344 | for (size_t i = 0; i < count_ad_cells; i++)
| ~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/readtr.cpp -o phreeqcpp/readtr.o
phreeqcpp/readtr.cpp: In member function ‘int Phreeqc::read_transport()’:
phreeqcpp/readtr.cpp:823:57: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
823 | for (size_t i = count_length; i <= max_cells; i++)
| ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/runner.cpp -o phreeqcpp/runner.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/SelectedOutput.cpp -o phreeqcpp/SelectedOutput.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Serializer.cpp -o phreeqcpp/Serializer.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/sit.cpp -o phreeqcpp/sit.o
phreeqcpp/sit.cpp: In member function ‘int Phreeqc::sit_initial_guesses()’:
phreeqcpp/sit.cpp:593:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
593 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/sit.cpp: In member function ‘int Phreeqc::sit_revise_guesses()’:
phreeqcpp/sit.cpp:695:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
695 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/sit.cpp:708:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
708 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/sit.cpp: In member function ‘int Phreeqc::jacobian_sit()’:
phreeqcpp/sit.cpp:1002:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1002 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/sit.cpp:1081:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1081 | for (j = 0; j < count_unknowns; j++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/sit.cpp: In member function ‘int Phreeqc::check_gammas_sit()’:
phreeqcpp/sit.cpp:1416:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1416 | for (i = 0; i < count_unknowns; i++)
| ~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/smalldense.cpp -o phreeqcpp/smalldense.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/SolutionIsotope.cpp -o phreeqcpp/SolutionIsotope.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Solution.cpp -o phreeqcpp/Solution.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/spread.cpp -o phreeqcpp/spread.o
phreeqcpp/spread.cpp: In member function ‘int Phreeqc::read_solution_spread()’:
phreeqcpp/spread.cpp:96:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
96 | for (size_t i = 0; i < count_iso_defaults; ++i) {
| ~~^~~~~~~~~~~~~~~~~~~~
phreeqcpp/spread.cpp:259:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
259 | for (int i = 0; i < row_ptr->count; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/spread.cpp:508:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
508 | for (i = 0; i < heading->count; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/spread.cpp: In member function ‘int Phreeqc::spread_row_to_solution(spread_row*, spread_row*, spread_row*, defaults)’:
phreeqcpp/spread.cpp:579:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
579 | for (i = 0; i < heading->count; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/spread.cpp:586:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
586 | if (i == heading->count || data->type_vector[i] == EMPTY
| ~~^~~~~~~~~~~~~~~~~
phreeqcpp/spread.cpp:587:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
587 | || data->count <= i)
| ~~~~~~~~~~~~^~~~
phreeqcpp/spread.cpp:653:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
653 | for (int i = 0; i < heading->count; i++)
| ~~^~~~~~~~~~~~~~~~
phreeqcpp/spread.cpp:674:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
674 | if (i >= data->count || data->type_vector[i] == EMPTY)
| ~~^~~~~~~~~~~~~~
phreeqcpp/spread.cpp:681:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
681 | if (units != NULL && i < units->count
| ~~^~~~~~~~~~~~~~
phreeqcpp/spread.cpp:834:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
834 | for (int ii = 0; ii < heading->count; ii++)
| ~~~^~~~~~~~~~~~~~~~
phreeqcpp/spread.cpp:849:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
849 | for (int ii = 0; ii < data->count; ii++)
| ~~~^~~~~~~~~~~~~
phreeqcpp/spread.cpp:863:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
863 | for (int ii = 0; ii < units->count; ii++)
| ~~~^~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/SSassemblage.cpp -o phreeqcpp/SSassemblage.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/SScomp.cpp -o phreeqcpp/SScomp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/SS.cpp -o phreeqcpp/SS.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/step.cpp -o phreeqcpp/step.o
phreeqcpp/step.cpp: In member function ‘int Phreeqc::add_pp_assemblage(cxxPPassemblage*)’:
phreeqcpp/step.cpp:721:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
721 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/step.cpp:757:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
757 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/step.cpp: In member function ‘int Phreeqc::reaction_calc(cxxReaction*)’:
phreeqcpp/step.cpp:990:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
990 | for (int i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/step.cpp: In member function ‘int Phreeqc::add_gas_phase(cxxGasPhase*)’:
phreeqcpp/step.cpp:1047:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1047 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/step.cpp: In member function ‘int Phreeqc::add_ss_assemblage(cxxSSassemblage*)’:
phreeqcpp/step.cpp:1109:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1109 | for (k = 0; k < count_elts; k++)
| ~~^~~~~~~~~~~~
phreeqcpp/step.cpp:1146:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1146 | for (k = 0; k < count_elts; k++)
| ~~^~~~~~~~~~~~
phreeqcpp/step.cpp: In member function ‘int Phreeqc::gas_phase_check(cxxGasPhase*)’:
phreeqcpp/step.cpp:1244:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1244 | for (int j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/step.cpp: In member function ‘int Phreeqc::pp_assemblage_check(cxxPPassemblage*)’:
phreeqcpp/step.cpp:1316:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1316 | for (int i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/step.cpp: In member function ‘int Phreeqc::ss_assemblage_check(cxxSSassemblage*)’:
phreeqcpp/step.cpp:1390:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1390 | for (l = 0; l < count_elts; l++)
| ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/StorageBinList.cpp -o phreeqcpp/StorageBinList.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/StorageBin.cpp -o phreeqcpp/StorageBin.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/structures.cpp -o phreeqcpp/structures.o
phreeqcpp/structures.cpp: In member function ‘int Phreeqc::add_elt_list(const cxxNameDouble&, double)’:
phreeqcpp/structures.cpp:399:32: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
399 | if (count_elts >= (int)elt_list.size())
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘int Phreeqc::change_hydrogen_in_elt_list(double)’:
phreeqcpp/structures.cpp:440:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
440 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘int Phreeqc::elt_list_combine()’:
phreeqcpp/structures.cpp:493:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
493 | for (i = 1; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘cxxNameDouble Phreeqc::elt_list_NameDouble()’:
phreeqcpp/structures.cpp:581:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
581 | for (int i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘int Phreeqc::inverse_free(inverse*)’:
phreeqcpp/structures.cpp:681:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
681 | for (i = 0; i < inverse_ptr->elts.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/structures.cpp:688:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
688 | for (i = 0; i < inverse_ptr->isotopes.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/structures.cpp:694:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
694 | for (i = 0; i < inverse_ptr->i_u.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/structures.cpp:701:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_phases>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
701 | for (i = 0; i < inverse_ptr->phases.size(); i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘master* Phreeqc::master_bsearch_secondary(const char*)’:
phreeqcpp/structures.cpp:995:49: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
995 | if ((master_ptr_primary->number >= (int)master.size() - 1) ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘int Phreeqc::trxn_combine()’:
phreeqcpp/structures.cpp:2125:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2125 | for (k = 2; k < count_trxn; k++)
| ~~^~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘double Phreeqc::trxn_find_coef(const char*, int)’:
phreeqcpp/structures.cpp:2236:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2236 | for (i = start; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘int Phreeqc::trxn_multiply(double)’:
phreeqcpp/structures.cpp:2276:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2276 | for (i = 0; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘int Phreeqc::trxn_print()’:
phreeqcpp/structures.cpp:2314:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2314 | for (i = 0; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/structures.cpp: In member function ‘int Phreeqc::trxn_swap(const char*)’:
phreeqcpp/structures.cpp:2381:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2381 | for (j = 0; j < count_trxn; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/structures.cpp:2386:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2386 | if (j >= count_trxn)
| ~~^~~~~~~~~~~~~
phreeqcpp/structures.cpp:2391:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2391 | for (i = 0; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/sundialsmath.cpp -o phreeqcpp/sundialsmath.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/SurfaceCharge.cpp -o phreeqcpp/SurfaceCharge.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/SurfaceComp.cpp -o phreeqcpp/SurfaceComp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Surface.cpp -o phreeqcpp/Surface.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/System.cpp -o phreeqcpp/System.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/tally.cpp -o phreeqcpp/tally.o
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::store_tally_table(double*, int, int, double)’:
phreeqcpp/tally.cpp:183:36: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
183 | if (count_tally_table_rows > row_dim)
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
phreeqcpp/tally.cpp:191:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
191 | if (count_tally_table_columns > col_dim)
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
phreeqcpp/tally.cpp:202:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
202 | for (j = 0; j < count_tally_table_rows; j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:209:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
209 | for (j = 0; j < count_tally_table_rows; j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:222:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
222 | for (i = 2; i < count_tally_table_columns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:224:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
224 | for (j = 0; j < count_tally_table_rows; j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::get_tally_table_row_heading(int, char*)’:
phreeqcpp/tally.cpp:277:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
277 | if (row >= count_tally_table_rows)
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::get_tally_table_column_heading(int, int*, char*)’:
phreeqcpp/tally.cpp:306:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
306 | if (column >= count_tally_table_columns)
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::free_tally_table()’:
phreeqcpp/tally.cpp:327:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
327 | for (i = 0; i < count_tally_table_columns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::zero_tally_table()’:
phreeqcpp/tally.cpp:348:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
348 | for (i = 0; i < count_tally_table_columns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:351:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
351 | for (j = 0; j < count_tally_table_rows; j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::diff_tally_table()’:
phreeqcpp/tally.cpp:371:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
371 | for (i = 0; i < count_tally_table_columns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:373:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
373 | for (j = 0; j < count_tally_table_rows; j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::print_tally_table()’:
phreeqcpp/tally.cpp:397:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
397 | for (i = 0; i < count_tally_table_columns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:404:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
404 | for (j = 0; j < count_tally_table_rows; j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::fill_tally_table(int*, int, int)’:
phreeqcpp/tally.cpp:431:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
431 | for (int i = 0; i < count_tally_table_columns; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::elt_list_to_tally_table(tally_buffer*)’:
phreeqcpp/tally.cpp:707:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
707 | for (i = 0; i < count_tally_table_rows; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:716:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
716 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/tally.cpp:726:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
726 | for (i = 0; i < count_tally_table_rows; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:738:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
738 | if (i >= count_tally_table_rows)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::master_to_tally_table(tally_buffer*)’:
phreeqcpp/tally.cpp:752:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
752 | for (i = 0; i < count_tally_table_rows; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:772:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
772 | for (i = 0; i < count_tally_table_rows; i++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:780:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
780 | if (i >= count_tally_table_rows)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::build_tally_table()’:
phreeqcpp/tally.cpp:894:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
894 | for (k = 1; k < count_tally_table_columns; k++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:902:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
902 | if (k < count_tally_table_columns)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:956:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
956 | for (l = 1; l < count_tally_table_columns; l++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:962:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
962 | if (l < count_tally_table_columns)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:998:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
998 | for (l = 1; l < count_tally_table_columns; l++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp:1004:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1004 | if (l < count_tally_table_columns)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tally.cpp: In member function ‘int Phreeqc::extend_tally_table()’:
phreeqcpp/tally.cpp:1229:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1229 | for (j = 0; j < count_tally_table_rows; j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Temperature.cpp -o phreeqcpp/Temperature.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/tidy.cpp -o phreeqcpp/tidy.o
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::rewrite_eqn_to_secondary()’:
phreeqcpp/tidy.cpp:748:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
748 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::replace_solids_gases()’:
phreeqcpp/tidy.cpp:813:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
813 | for (i = 1; i < count_trxn; i++)
| ~~^~~~~~~~~~~~
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::rewrite_eqn_to_primary()’:
phreeqcpp/tidy.cpp:909:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
909 | for (j = 1; j < count_trxn; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::tidy_inverse()’:
phreeqcpp/tidy.cpp:1183:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1183 | for (j = 0; j < inverse[i].elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1200:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1200 | for (k = 0; k < inverse[i].count_solns; k++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1221:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_phases>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1221 | for (j = 0; j < inverse[i].phases.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1238:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<isotope>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1238 | for (k = 0; k < inverse[i].phases[j].isotopes.size(); k++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1307:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1307 | for (j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/tidy.cpp:1312:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1312 | for (j = 0; j < inverse[i].elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1382:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1382 | for (k = 0; k < inverse[i].count_solns; k++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1402:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1402 | for (j = 0; j < inverse[i].elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1420:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1420 | for (l = 0; l < inverse[i].count_solns; l++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1430:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1430 | for (j = 0; j < inverse[i].elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1448:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1448 | for (l = 0; l < inverse[i].count_solns; l++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:1464:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<inv_elts>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1464 | for (j = 0; j < inverse[i].elts.size(); j++)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::tidy_species()’:
phreeqcpp/tidy.cpp:2397:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2397 | for (j = 1; j < count_trxn; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::tidy_isotopes()’:
phreeqcpp/tidy.cpp:2963:79: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2963 | for (size_t k = primary_number + 1; k < (int)master.size(); k++)
| ~~^~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::tidy_min_exchange()’:
phreeqcpp/tidy.cpp:3421:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3421 | for (jj = 0; jj < count_elts; jj++)
| ~~~^~~~~~~~~~~~
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::update_min_exchange()’:
phreeqcpp/tidy.cpp:3591:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3591 | for (jj = 0; jj < count_elts; jj++)
| ~~~^~~~~~~~~~~~
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::tidy_min_surface()’:
phreeqcpp/tidy.cpp:3824:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3824 | for (int jj = 0; jj < count_elts; jj++)
| ~~~^~~~~~~~~~~~
phreeqcpp/tidy.cpp: In member function ‘int Phreeqc::tidy_kin_surface()’:
phreeqcpp/tidy.cpp:4212:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4212 | for (int j = 0; j < count_elts; j++)
| ~~^~~~~~~~~~~~
phreeqcpp/tidy.cpp:4245:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4245 | for (l = 0; l < count_elts_kinetics; l++)
| ~~^~~~~~~~~~~~~~~~~~~~~
phreeqcpp/tidy.cpp:4252:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
4252 | if (l == count_elts_kinetics)
| ~~^~~~~~~~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/transport.cpp -o phreeqcpp/transport.o
phreeqcpp/transport.cpp: In member function ‘void Phreeqc::diffuse_implicit(double, int)’:
phreeqcpp/transport.cpp:2804:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2804 | for (int k = 0; k < count_elts; k++)
| ~~^~~~~~~~~~~~
phreeqcpp/transport.cpp: In member function ‘int Phreeqc::fill_m_s(J_ij*, int, int, int)’:
phreeqcpp/transport.cpp:3661:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3661 | for (k = 0; k < count_elts; k++)
| ~~^~~~~~~~~~~~
phreeqcpp/transport.cpp:3684:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
3684 | for (k = 0; k < count_elts; k++)
| ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Use.cpp -o phreeqcpp/Use.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/UserPunch.cpp -o phreeqcpp/UserPunch.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/utilities.cpp -o phreeqcpp/utilities.o
phreeqcpp/utilities.cpp: In member function ‘int Phreeqc::compute_gfw(const char*, double*)’:
phreeqcpp/utilities.cpp:243:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
243 | for (i = 0; i < count_elts; i++)
| ~~^~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -Iphreeqcpp -DNDEBUG -DR_SO -DSWIG_SHARED_OBJ -DNO_UTF8_ENCODING -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phreeqcpp/Utils.cpp -o phreeqcpp/Utils.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o phreeqc.so CSelectedOutput.o IPhreeqcLib.o IPhreeqc.o R.o Var.o phreeqcpp/advection.o phreeqcpp/basicsubs.o phreeqcpp/ChartHandler.o phreeqcpp/ChartObject.o phreeqcpp/cl1.o phreeqcpp/CurveObject.o phreeqcpp/cvdense.o phreeqcpp/cvode.o phreeqcpp/cxxKinetics.o phreeqcpp/cxxMix.o phreeqcpp/dense.o phreeqcpp/Dictionary.o phreeqcpp/dumper.o phreeqcpp/Exchange.o phreeqcpp/ExchComp.o phreeqcpp/GasComp.o phreeqcpp/gases.o phreeqcpp/GasPhase.o phreeqcpp/input.o phreeqcpp/integrate.o phreeqcpp/inverse.o phreeqcpp/ISolutionComp.o phreeqcpp/ISolution.o phreeqcpp/isotopes.o phreeqcpp/Keywords.o phreeqcpp/KineticsComp.o phreeqcpp/kinetics.o phreeqcpp/mainsubs.o phreeqcpp/model.o phreeqcpp/NameDouble.o phreeqcpp/NumKeyword.o phreeqcpp/nvector.o phreeqcpp/nvector_serial.o phreeqcpp/parse.o phreeqcpp/Parser.o phreeqcpp/PBasic.o phreeqcpp/phqalloc.o phreeqcpp/Phreeqc.o phreeqcpp/PHRQ_base.o phreeqcpp/PHRQ_io.o phreeqcpp/PHRQ_io_output.o phreeqcpp/pitzer.o phreeqcpp/pitzer_structures.o phreeqcpp/PPassemblageComp.o phreeqcpp/PPassemblage.o phreeqcpp/prep.o phreeqcpp/Pressure.o phreeqcpp/print.o phreeqcpp/Reaction.o phreeqcpp/ReadClass.o phreeqcpp/read.o phreeqcpp/readtr.o phreeqcpp/runner.o phreeqcpp/SelectedOutput.o phreeqcpp/Serializer.o phreeqcpp/sit.o phreeqcpp/smalldense.o phreeqcpp/SolutionIsotope.o phreeqcpp/Solution.o phreeqcpp/spread.o phreeqcpp/SSassemblage.o phreeqcpp/SScomp.o phreeqcpp/SS.o phreeqcpp/step.o phreeqcpp/StorageBinList.o phreeqcpp/StorageBin.o phreeqcpp/structures.o phreeqcpp/sundialsmath.o phreeqcpp/SurfaceCharge.o phreeqcpp/SurfaceComp.o phreeqcpp/Surface.o phreeqcpp/System.o phreeqcpp/tally.o phreeqcpp/Temperature.o phreeqcpp/tidy.o phreeqcpp/transport.o phreeqcpp/Use.o phreeqcpp/UserPunch.o phreeqcpp/utilities.o phreeqcpp/Utils.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpPD1mli/R.INSTALL1d7f3b2ac823/phreeqc/src'
make[1]: Entering directory '/tmp/RtmpPD1mli/R.INSTALL1d7f3b2ac823/phreeqc/src'
make[1]: Leaving directory '/tmp/RtmpPD1mli/R.INSTALL1d7f3b2ac823/phreeqc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-phreeqc/00new/phreeqc/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘phreeqc’
finding HTML links ... done
Amm.dat html
ColdChem.dat html
Tipping_Hurley.dat html
core10.dat html
ex1 html
ex10 html
ex11 html
ex12 html
ex13 html
ex14 html
ex15 html
ex15.dat html
ex16 html
ex17 html
ex18 html
ex19 html
ex2 html
ex20 html
ex21 html
ex22 html
ex3 html
ex4 html
ex5 html
ex6 html
ex7 html
ex8 html
ex9 html
frezchem.dat html
iso.dat html
llnl.dat html
minteq.dat html
minteq.v4.dat html
phrAccumulateLine html
phrClearAccumulatedLines html
phrGetAccumulatedLines html
phrGetComponentList html
phrGetDumpFileName html
phrGetDumpFileOn html
phrGetDumpStrings html
phrGetDumpStringsOn html
phrGetErrorFileName html
phrGetErrorFileOn html
phrGetErrorStrings html
phrGetErrorStringsOn html
phrGetLogFileName html
phrGetLogFileOn html
phrGetLogStrings html
phrGetLogStringsOn html
phrGetOutputFileName html
phrGetOutputFileOn html
phrGetOutputStrings html
phrGetOutputStringsOn html
phrGetSelectedOutput html
phrGetSelectedOutputFileName html
phrGetWarningStrings html
phrLoadDatabase html
phrLoadDatabaseString html
phrRunAccumulated html
phrRunFile html
phrRunString html
phrSetDumpFileName html
phrSetDumpFileOn html
phrSetDumpStringsOn html
phrSetErrorFileName html
phrSetErrorFileOn html
phrSetErrorStringsOn html
phrSetLogFileName html
phrSetLogFileOn html
phrSetLogStringsOn html
phrSetOutputFileName html
phrSetOutputFileOn html
phrSetOutputStringsOn html
phrSetSelectedOutputFileName html
phrSetSelectedOutputFileOn html
phreeqc-package html
phreeqc.dat html
pitzer.dat html
sit.dat html
wateq4f.dat html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phreeqc)