* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘penetrance’ ...
** this is package ‘penetrance’ version ‘0.1.1’
** package ‘penetrance’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘penetrance’
    finding HTML links ... done
    absValue                                html  
    apply_burn_in                           html  
    apply_thinning                          html  
    baseline_data_default                   html  
    calculateBaseline                       html  
    calculateEmpiricalDensity               html  
    calculateNCPen                          html  
    calculate_weibull_parameters            html  
    combine_chains                          html  
    combine_chains_noSex                    html  
    distribution_data_default               html  
    drawBaseline                            html  
    drawEmpirical                           html  
    generate_density_plots                  html  
    generate_summary                        html  
    generate_summary_noSex                  html  
    imputeAges                              html  
    imputeAgesInit                          html  
    imputeUnaffectedAges                    html  
    lik.fn                                  html  
    lik_noSex                               html  
    makePriors                              html  
    mhChain                                 html  
    mhLogLikelihood_clipp                   html  
    mhLogLikelihood_clipp_noSex             html  
    out_sim                                 html  
    penetrance                              html  
    plot_acf                                html  
    plot_loglikelihood                      html  
    plot_pdf                                html  
    plot_penetrance                         html  
    plot_trace                              html  
    printRejectionRates                     html  
    prior_params_default                    html  
    risk_proportion_default                 html  
    simulated_families                      html  
    test_fam2                               html  
    transformDF                             html  
    validate_weibull_parameters             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (penetrance)