* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pedtools’ ...
** this is package ‘pedtools’ version ‘2.9.0’
** package ‘pedtools’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘pedtools’
    finding HTML links ... done
    addAllele                               html  
    as.data.frame.ped                       html  
    as.matrix.ped                           html  
    as.ped                                  html  
    as_kinship2_pedigree                    html  
    connectedComponents                     html  
    distributeMarkers                       html  
    extractSingletons                       html  
    famid                                   html  
    founderInbreeding                       html  
    freqDatabase                            html  
    getAlleles                              html  
    getComponent                            html  
    getGenotypes                            html  
    getMap                                  html  
    getSex                                  html  
    harmoniseMarkers                        html  
    inbreedingLoops                         html  
    is.marker                               html  
    is.ped                                  html  
    locusAttributes                         html  
    marker                                  html  
    marker_attach                           html  
    marker_getattr                          html  
    marker_inplace                          html  
    marker_prop                             html  
    marker_select                           html  
    marker_setattr                          html  
    maskPed                                 html  
    mendelianCheck                          html  
    mergePed                                html  
    nMarkers                                html  
    newMarker                               html  
    newPed                                  html  
    ped                                     html  
    ped_basic                               html  
    ped_complex                             html  
    ped_internal                            html  
    ped_modify                              html  
    ped_subgroups                           html  
    ped_utils                               html  
    pedtools-package                        html  
    plot.ped                                html  
    plotPedList                             html  
    plotmethods                             html  
    print.nucleus                           html  
    print.ped                               html  
    randomPed                               html  
    readPed                                 html  
    relabel                                 html  
    setMutmod                               html  
    setSNPs                                 html  
    sortGenotypes                           html  
    swapGenotypes                           html  
    transferMarkers                         html  
    validatePed                             html  
    writePed                                html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pedtools)