* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pda’ ...
** package ‘pda’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmppWZKg0/R.INSTALLd736a2da8964b/pda/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rcpp_coxph.cpp -o rcpp_coxph.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o pda.so RcppExports.o rcpp_coxph.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmppWZKg0/R.INSTALLd736a2da8964b/pda/src'
make[1]: Entering directory '/tmp/RtmppWZKg0/R.INSTALLd736a2da8964b/pda/src'
make[1]: Leaving directory '/tmp/RtmppWZKg0/R.INSTALLd736a2da8964b/pda/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-pda/00new/pda/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘pda’
    finding HTML links ... done
    ADAP.derive                             html  
    ADAP.estimate                           html  
    ADAP.initialize                         html  
    ADAP_data                               html  
    DLM.estimate                            html  
    DLM.initialize                          html  
    DPQL.derive                             html  
    DPQL.estimate                           html  
    DPQL.initialize                         html  
    LOS                                     html  
    ODAC.derive                             html  
    ODAC.deriveUWZ                          html  
    ODAC.estimate                           html  
    ODAC.initialize                         html  
    ODAC.synthesize                         html  
    ODACAT.derive                           html  
    ODACAT.estimate                         html  
    ODACAT.initialize                       html  
    ODACAT.synthesize                       html  
    ODACATH.derive                          html  
    ODACATH.estimate                        html  
    ODACATH.initialize                      html  
    ODACATH.synthesize                      html  
    ODACAT_nominal                          html  
    ODACAT_ordinal                          html  
    ODAH.derive                             html  
    ODAH.estimate                           html  
    ODAH.initialize                         html  
    ODAL.derive                             html  
    ODAL.estimate                           html  
    ODAL.initialize                         html  
    ODAL.synthesize                         html  
    ODAP.derive                             html  
    ODAP.estimate                           html  
    ODAP.initialize                         html  
    ODAPB.derive                            html  
    ODAPB.estimate                          html  
    ODAPB.initialize                        html  
    covid                                   html  
    cs                                      html  
    dGEM.derive                             html  
    dGEM.estimate                           html  
    dGEM.initialize                         html  
    dGEM.synthesize                         html  
    getCloudConfig                          html  
    lung2                                   html  
    myglmmPQL                               html  
    pda                                     html  
    pdaGet                                  html  
    pdaList                                 html  
    pdaPut                                  html  
    pdaSync                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pda)