* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pbatR’ ...
** package ‘pbatR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpLYmWPm/R.INSTALL2d0070470104b1/pbatR/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c data.cpp -o data.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fbatDist.cpp -o fbatDist.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kludge.cpp -o kludge.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pbatR_init.c -o pbatR_init.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c powerSim.cpp -o powerSim.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random.cpp -o random.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sh2win.cpp -o sh2win.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wait.cpp -o wait.o
wait.cpp: In function ‘int runCommands()’:
wait.cpp:88:13: warning: unused variable ‘sysRes’ [-Wunused-variable]
88 | int sysRes = system( cmds[i].c_str() );
| ^~~~~~
wait.cpp:82:11: warning: variable ‘pid’ set but not used [-Wunused-but-set-variable]
82 | int pid = -999;
| ^~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o pbatR.so data.o fbatDist.o kludge.o pbatR_init.o powerSim.o random.o sh2win.o wait.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpLYmWPm/R.INSTALL2d0070470104b1/pbatR/src'
make[1]: Entering directory '/tmp/RtmpLYmWPm/R.INSTALL2d0070470104b1/pbatR/src'
make[1]: Leaving directory '/tmp/RtmpLYmWPm/R.INSTALL2d0070470104b1/pbatR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-pbatR/00new/pbatR/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘pbatR’
finding HTML links ... done
affectionPhe html
c2bat html
cluster html
cped html
obfuscate html
pbat html
pbat.clean html
pbat.help html
pbat.set html
pbat.status html
pbat.work html
ped html
phe html
power html
summary html
top html
write.pbat.csv html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pbatR)