* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘paleotree’ ...
** this is package ‘paleotree’ version ‘3.4.7’
** package ‘paleotree’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘paleotree’
    finding HTML links ... done
    DiversityCurves                         html  
    RaiaCopesRule                           html  
    SamplingConv                            html  
    SongZhangDicrano                        html  
    binTimeData                             html  
    branchClasses                           html  
    cal3TimePaleoPhy                        html  
    cladogeneticTraitCont                   html  
    communityEcology                        html  
    compareTimescaling                      html  
    constrainParPaleo                       html  
    createMrBayesConstraints                html  
    createMrBayesTipCalibrations            html  
    createMrBayesTipDatingNexus             html  
    dateNodes                               html  
    dateTaxonTreePBDB                       html  
    degradeTree                             html  
    depthRainbow                            html  
    divCurveFossilRecordSim                 html  
    durationFreq                            html  
    equation2function                       html  
    exhaustionFunctions                     html  
    expandTaxonTree                         html  
    fixRootTime                             html  
    footeValues                             html  
    freqRat                                 html  
    getDataPBDB                             html  
    graptDisparity                          html  
    graptPBDB                               html  
    horizonSampRate                         html  
    inverseSurv                             html  
    kanto                                   html  
    macroperforateForam                     html  
    makePBDBtaxonTree                       html  
    minBranchLength                         html  
    minCharChange                           html  
    modelMethods                            html  
    modifyTerminalBranches                  html  
    multiDiv                                html  
    nearestNeighborDist                     html  
    nodeDates2branchLengths                 html  
    obtainDatedPosteriorTreesMrB            html  
    occData2timeList                        html  
    optimPaleo                              html  
    paleotree-package                       html  
    parentChild2taxonTree                   html  
    perCapitaRates                          html  
    perfectParsCharTree                     html  
    plotOccData                             html  
    plotPhyloPicTree                        html  
    plotTraitgram                           html  
    pqr2Ps                                  html  
    probAnc                                 html  
    resolveTreeChar                         html  
    retiolitinae                            html  
    reverseList                             html  
    rootSplit                               html  
    sampleRanges                            html  
    seqTimeList                             html  
    setRootAge                              html  
    simFossilRecord                         html  
    simFossilRecordMethods                  html  
    taxa2cladogram                          html  
    taxa2phylo                              html  
    taxonSortPBDBocc                        html  
    taxonTable2taxonTree                    html  
    termTaxa                                html  
    testEdgeMat                             html  
    timeLadderTree                          html  
    timeList2fourDate                       html  
    timePaleoPhy                            html  
    timeSliceTree                           html  
    tipDatingCompatabilitySummaryMrB        html  
    treeContradiction                       html  
    twoWayEcologyCluster                    html  
    unitLengthTree                          html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (paleotree)