* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘packDAMipd’ ...
** package ‘packDAMipd’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
[1] "The transition matrix as explained"
transition number probability name from from state to to state
<num> <char> <int> <char> <int> <char>
1: 1 prob_Healthy_to_Healthy 1 Healthy 1 Healthy
2: 2 prob_Healthy_to_Dead 1 Healthy 2 Dead
3: 3 prob_Dead_to_Healthy 2 Dead 1 Healthy
4: 4 prob_Dead_to_Dead 2 Dead 2 Dead
** help
*** installing help indices
converting help for package ‘packDAMipd’
finding HTML links ... done
add_entries_sameuse_timepoint html
adl_scoring.df html
assign_parameters html
blank.df html
calculate_icer_nmb html
check_equal_columncontents_NAomitted html
check_equal_sumcolumncontents_NAomitted
html
check_estimate_required_params html
check_estimate_substitute_proper_params
html
check_link_glm html
check_list_markov_models html
check_null_na html
check_trans_prob html
check_treatment_arm html
check_values_states html
checks_markov_pick_method html
checks_plot_dsa html
combine_markov html
combine_state html
convert_freq_diff_basis html
convert_to_given_timeperiod html
convert_volume_basis html
convert_weight_diff_basis html
convert_wtpertimediff_basis html
convert_wtpervoldiff_basis html
cost_data.df html
costing_AandE_admission html
costing_inpatient_daycase_admission html
costing_opioid_liquids_averageMED_long
html
costing_opioid_liquids_averageMED_wide
html
costing_opioid_patches_averageMED_long
html
costing_opioid_patches_averageMED_wide
html
costing_opioid_tablets_MED_wide html
costing_opioid_tablets_averageMED_long
html
costing_opioid_tablets_averageMED_wide
html
costing_resource_use html
create_new_dataset html
create_shorttable_from_gtsummary_compare_twogroups_timpoints
html
create_table_from_gtsummary_compare_twogroups
html
define_parameters html
define_parameters_psa html
define_parameters_sens_anal html
define_transition_table html
do_diagnostic_glm html
do_diagnostic_linear_regression html
do_psa html
do_sensitivity_analysis html
encode_codes_data html
eval_assign_trans_prob html
eval_assign_values_states html
find_glm_distribution html
find_keyword_rand_generation html
find_keyword_regression_method html
find_parameters_btn_operators html
find_required_parameter_combs html
find_rowwise_sum_multiplecol html
find_survreg_distribution html
form_expression_glm html
form_expression_lm html
form_expression_mixed_model_lme4 html
generate_wt_time_units html
generate_wt_vol_units html
get_age_details html
get_colnames_codedvalues html
get_cost_AandE_code html
get_cost_AandE_description html
get_cost_ip_dc_description html
get_cost_ip_dc_hrg html
get_doses_combination html
get_doses_combination_units html
get_eq5d_details html
get_extension_file html
get_gender_details html
get_mean_sd_age html
get_mortality_from_file html
get_name_value_probdistrb_def html
get_outcome_details html
get_parameter_def_distribution html
get_parameter_direct html
get_parameter_estimated_regression html
get_parameter_read html
get_single_col_multiple_pattern html
get_slope_intercept html
get_slope_intercept_cross html
get_slope_intercept_nested html
get_timepoint_details html
get_trial_arm_details html
get_var_state html
health_state html
init_trace html
init_trace_sjtime html
keep_results_plot_dsa html
list_paramwise_psa_result html
load_trial_data html
make_string_covariates html
map_eq5d5Lto3L_VanHout html
map_resource_use_categories html
markov_model html
markov_model_sojourntime html
microcosting_liquids_long html
microcosting_liquids_wide html
microcosting_patches_long html
microcosting_patches_wide html
microcosting_tablets_long html
microcosting_tablets_wide html
plot_ceac_psa html
plot_dsa html
plot_dsa_difference html
plot_dsa_icer_range html
plot_dsa_nmb_range html
plot_dsa_others_range html
plot_efficiency_frontier html
plot_histogram_onetimepoint_twogroups html
plot_meanSE_longitudinal_twogroups html
plot_model html
plot_nmb_lambda html
plot_prediction_parametric_survival html
plot_return_residual_cox html
plot_return_residual_survival html
plot_return_survival_curve html
plot_survival_cox_covariates html
populate_transition_matrix html
predict_coxph html
prediction_regression html
promis3a_scoring.df html
report_sensitivity_analysis html
return0_if_not_null_na html
return_equal_liststring_col html
return_equal_liststring_listcol html
return_equal_str_col html
set_var_state html
strategy html
summary_plot_psa html
table_param.df html
trace_data.df html
transition_cost_util html
trial_data.df html
use_coxph_survival html
use_fh2_survival html
use_fh_survival html
use_generalised_linear_mixed_model html
use_generalised_linear_model html
use_km_survival html
use_linear_mixed_model html
use_linear_regression html
use_parametric_survival html
use_seemingly_unrelated_regression html
use_survival_analysis html
utility_data.df html
value_ADL_scores_IPD html
value_Shows_IPD html
value_eq5d3L_IPD html
value_eq5d5L_IPD html
value_promis3a_scores_IPD html
word2num html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (packDAMipd)