* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘oystermapR’ ...
** this is package ‘oystermapR’ version ‘1.5.0’
** package ‘oystermapR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘oystermapR’
    finding HTML links ... done
    add_intertidal_flag                     html  
    add_season_column                       html  
    add_shellfish_classification            html  
    add_suitability_ci                      html  
    analyse_connectivity                    html  
    area_summary                            html  
    assess_gear_feasibility                 html  
    auto_tidal_correct                      html  
    calculate_aragonite                     html  
    check_exclusions                        html  
    classify_substrate_from_backscatter     html  
    compare_species                         html  
    compare_surveys                         html  
    composite_seasonal                      html  
    correct_to_chart_datum                  html  
    detect_season                           html  
    dot-apply_bayesian_update               html  
    dot-ascii_roc                           html  
    dot-auto_calculate_aragonite            html  
    dot-auto_map_columns                    html  
    dot-detect_sidelobe_bins                html  
    dot-distance_to_nearest_m               html  
    dot-estimate_cell_size_m                html  
    dot-find_col_any                        html  
    dot-get_cached_tolerances               html  
    dot-haversine_km                        html  
    dot-idw_interpolate                     html  
    dot-mode                                html  
    dot-nodal_factors                       html  
    dot-numerical_hessian                   html  
    dot-predict_harmonic_heights            html  
    dot-run_patch_analysis                  html  
    dot-rwmh                                html  
    dot-score_categorical                   html  
    dot-score_numeric                       html  
    dot-score_row                           html  
    dot-species_tolerances                  html  
    dot-standardise_coords                  html  
    dot-top_introduction_sites              html  
    estimate_chlorophyll_from_backscatter   html  
    estimate_fetch                          html  
    export_contours                         html  
    export_geotiff                          html  
    export_qml_style                        html  
    fetch_live_environmental_data           html  
    generate_report                         html  
    generate_summary_pdf                    html  
    get_species_tolerances                  html  
    get_tolerance_posteriors                html  
    identify_resilient_sites                html  
    interpolate_survey                      html  
    list_species                            html  
    load_tolerance_update                   html  
    merge_sensor_data                       html  
    oystermapR-package                      html  
    oystermapR_help                         html  
    oystermapR_live_config                  html  
    parse_opendrift_connectivity            html  
    permutation_importance                  html  
    plot_tolerance                          html  
    predict_oyster                          html  
    project_suitability                     html  
    qc_survey_data                          html  
    read_aanderaa_csv                       html  
    read_generic_csv                        html  
    read_nortek_adcp                        html  
    read_nortek_aquadopp                    html  
    read_rdi_adcp                           html  
    read_sonar_tif                          html  
    read_soundings_xyz                      html  
    reset_tolerance_update                  html  
    save_tolerance_update                   html  
    score_anthropogenic_disturbance         html  
    score_disease_risk                      html  
    score_economic_viability                html  
    score_hab_risk                          html  
    score_larval_connectivity               html  
    score_locations                         html  
    score_predation_risk                    html  
    score_sediment_stability                html  
    score_settlement                        html  
    score_wave_exposure                     html  
    sensitivity_analysis                    html  
    smooth_suitability                      html  
    spatial_block_cv                        html  
    stack_surveys                           html  
    tidal_port_info                         html  
    update_species_tolerances               html  
    validate_against_records                html  
    variable_impact                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (oystermapR)