* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘oystermapR’ ...
** this is package ‘oystermapR’ version ‘1.4.0’
** package ‘oystermapR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘oystermapR’
finding HTML links ... done
add_intertidal_flag html
add_season_column html
add_shellfish_classification html
add_suitability_ci html
analyse_connectivity html
assess_gear_feasibility html
auto_tidal_correct html
check_exclusions html
classify_substrate_from_backscatter html
compare_species html
compare_surveys html
composite_seasonal html
correct_to_chart_datum html
detect_season html
dot-apply_bayesian_update html
dot-ascii_roc html
dot-auto_map_columns html
dot-detect_sidelobe_bins html
dot-distance_to_nearest_m html
dot-find_col_any html
dot-get_cached_tolerances html
dot-haversine_km html
dot-idw_interpolate html
dot-mode html
dot-nodal_factors html
dot-numerical_hessian html
dot-predict_harmonic_heights html
dot-rwmh html
dot-score_categorical html
dot-score_numeric html
dot-score_row html
dot-species_tolerances html
dot-standardise_coords html
dot-top_introduction_sites html
estimate_chlorophyll_from_backscatter html
estimate_fetch html
export_contours html
export_geotiff html
export_qml_style html
fetch_live_environmental_data html
generate_report html
generate_summary_pdf html
get_species_tolerances html
get_tolerance_posteriors html
identify_resilient_sites html
interpolate_survey html
list_species html
load_tolerance_update html
merge_sensor_data html
oystermapR-package html
oystermapR_help html
oystermapR_live_config html
parse_opendrift_connectivity html
permutation_importance html
predict_oyster html
project_suitability html
qc_survey_data html
read_aanderaa_csv html
read_generic_csv html
read_nortek_adcp html
read_nortek_aquadopp html
read_rdi_adcp html
read_sonar_tif html
read_soundings_xyz html
reset_tolerance_update html
save_tolerance_update html
score_anthropogenic_disturbance html
score_disease_risk html
score_economic_viability html
score_hab_risk html
score_larval_connectivity html
score_locations html
score_predation_risk html
score_sediment_stability html
score_settlement html
score_wave_exposure html
sensitivity_analysis html
smooth_suitability html
spatial_block_cv html
stack_surveys html
tidal_port_info html
update_species_tolerances html
validate_against_records html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (oystermapR)