* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ordinalTables’ ...
** this is package ‘ordinalTables’ version ‘1.0.0.3’
** package ‘ordinalTables’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ordinalTables’
    finding HTML links ... done
    Agresti_bisection                       html  
    Agresti_compute_lambda                  html  
    Agresti_compute_pi                      html  
    Agresti_create_design_matrix            html  
    Agresti_equation_1                      html  
    Agresti_equation_2                      html  
    Agresti_equation_3                      html  
    Agresti_extract_delta                   html  
    Agresti_f                               html  
    Agresti_kappa_agreement                 html  
    Agresti_simple_diagonals_parameter_quasi_symmetry
                                            html  
    Agresti_starting_values                 html  
    Agresti_w_diff                          html  
    Agresti_weighted_tau                    html  
    Bhapkar_marginal_homogeneity            html  
    Bhapkar_quasi_symmetry                  html  
    Bowker_symmetry                         html  
    Clayton_marginal_location               html  
    Clayton_stratified_marginal_location    html  
    Clayton_summarize                       html  
    Clayton_summarize_stratified            html  
    Clayton_two_way_association             html  
    Cliff_as_d_matrix                       html  
    Cliff_compute_d                         html  
    Cliff_counts_2                          html  
    Cliff_counts_3                          html  
    Cliff_counts_4                          html  
    Cliff_counts_5                          html  
    Cliff_counts_6                          html  
    Cliff_dependent                         html  
    Cliff_dependent_compute_cov             html  
    Cliff_dependent_compute_cov_from_d      html  
    Cliff_dependent_compute_from_matrix     html  
    Cliff_dependent_compute_from_table      html  
    Cliff_dependent_compute_paired_d        html  
    Cliff_independent                       html  
    Cliff_independent_from_matrix           html  
    Cliff_independent_from_table            html  
    Cliff_independent_weighted              html  
    Cliff_weighted_d_matrix                 html  
    Goodman_constrained_diagonals_parameter_symmetry
                                            html  
    Goodman_diagonals_parameter_symmetry    html  
    Goodman_fixed_parameter                 html  
    Goodman_ml                              html  
    Goodman_model_i                         html  
    Goodman_model_i_star                    html  
    Goodman_model_ii                        html  
    Goodman_model_ii_star                   html  
    Goodman_null_association                html  
    Goodman_pi                              html  
    Goodman_pi_matrix                       html  
    Goodman_symmetric_association_model     html  
    Goodman_uniform_association             html  
    Ireland_marginal_homogeneity            html  
    Ireland_mdis                            html  
    Ireland_normalize_for_truncation        html  
    Ireland_quasi_symmetry                  html  
    Ireland_quasi_symmetry_model            html  
    Ireland_symmetry                        html  
    McCullagh_compute_Nij                   html  
    McCullagh_compute_c_plus                html  
    McCullagh_compute_condition             html  
    McCullagh_compute_cumulative_sums       html  
    McCullagh_compute_cumulatives           html  
    McCullagh_compute_df                    html  
    McCullagh_compute_gamma                 html  
    McCullagh_compute_gamma_from_phi        html  
    McCullagh_compute_gamma_plus_1_from_phi
                                            html  
    McCullagh_compute_generalized_cumulatives
                                            html  
    McCullagh_compute_generalized_pi        html  
    McCullagh_compute_lambda                html  
    McCullagh_compute_log_l                 html  
    McCullagh_compute_omega                 html  
    McCullagh_compute_phi                   html  
    McCullagh_compute_phi_matrix            html  
    McCullagh_compute_pi                    html  
    McCullagh_compute_pi_from_beta          html  
    McCullagh_compute_pi_from_gamma         html  
    McCullagh_compute_regression_weights    html  
    McCullagh_compute_s_plus                html  
    McCullagh_compute_update                html  
    McCullagh_compute_z                     html  
    McCullagh_conditional_symmetry          html  
    McCullagh_conditional_symmetry_compute_s
                                            html  
    McCullagh_conditional_symmetry_initialize_phi
                                            html  
    McCullagh_conditional_symmetry_maximize_phi
                                            html  
    McCullagh_conditional_symmetry_maximize_theta
                                            html  
    McCullagh_conditional_symmetry_pi       html  
    McCullagh_derivative_condition_wrt_psi
                                            html  
    McCullagh_derivative_gamma_plus_1_wrt_phi
                                            html  
    McCullagh_derivative_gamma_wrt_phi      html  
    McCullagh_derivative_gamma_wrt_y        html  
    McCullagh_derivative_lagrangian_wrt_delta
                                            html  
    McCullagh_derivative_lagrangian_wrt_delta_vec
                                            html  
    McCullagh_derivative_lagrangian_wrt_psi
                                            html  
    McCullagh_derivative_log_l_wrt_alpha    html  
    McCullagh_derivative_log_l_wrt_beta     html  
    McCullagh_derivative_log_l_wrt_c        html  
    McCullagh_derivative_log_l_wrt_delta    html  
    McCullagh_derivative_log_l_wrt_delta_vec
                                            html  
    McCullagh_derivative_log_l_wrt_params   html  
    McCullagh_derivative_log_l_wrt_phi      html  
    McCullagh_derivative_log_l_wrt_psi      html  
    McCullagh_derivative_omega_wrt_alpha    html  
    McCullagh_derivative_omega_wrt_c        html  
    McCullagh_derivative_omega_wrt_delta    html  
    McCullagh_derivative_omega_wrt_delta_vec
                                            html  
    McCullagh_derivative_omega_wrt_psi      html  
    McCullagh_derivative_phi_wrt_gamma      html  
    McCullagh_derivative_pi_wrt_alpha       html  
    McCullagh_derivative_pi_wrt_c           html  
    McCullagh_derivative_pi_wrt_delta       html  
    McCullagh_derivative_pi_wrt_delta_vec   html  
    McCullagh_derivative_pi_wrt_psi         html  
    McCullagh_derivative_pij_wrt_alpha      html  
    McCullagh_derivative_pij_wrt_c          html  
    McCullagh_derivative_pij_wrt_delta      html  
    McCullagh_derivative_pij_wrt_delta_vec
                                            html  
    McCullagh_derivative_pij_wrt_psi        html  
    McCullagh_extract_weights               html  
    McCullagh_fit_location_regression_model
                                            html  
    McCullagh_generalized_palindromic_symmetry
                                            html  
    McCullagh_generalized_pij_qij           html  
    McCullagh_generate_names                html  
    McCullagh_get_statistics                html  
    McCullagh_gradient_log_l                html  
    McCullagh_hessian_log_l                 html  
    McCullagh_initialize_beta               html  
    McCullagh_initialize_delta              html  
    McCullagh_initialize_delta_vec          html  
    McCullagh_initialize_psi                html  
    McCullagh_initialize_x                  html  
    McCullagh_is_in_constraint_set          html  
    McCullagh_is_pi_invalid                 html  
    McCullagh_log_L                         html  
    McCullagh_logistic_model                html  
    McCullagh_logits                        html  
    McCullagh_maximize_q_symmetry           html  
    McCullagh_newton_raphson_update         html  
    McCullagh_palindromic_symmetry          html  
    McCullagh_penalized                     html  
    McCullagh_pij_qij                       html  
    McCullagh_proportional_hazards          html  
    McCullagh_q_symmetry_initialize_alpha   html  
    McCullagh_q_symmetry_initialize_phi     html  
    McCullagh_q_symmetry_pi                 html  
    McCullagh_quasi_symmetry                html  
    McCullagh_second_order_lagrangian_wrt_psi_2
                                            html  
    McCullagh_second_order_lagrangian_wrt_psi_alpha
                                            html  
    McCullagh_second_order_lagrangian_wrt_psi_delta
                                            html  
    McCullagh_second_order_lagrangian_wrt_psi_delta_vec
                                            html  
    McCullagh_second_order_log_l_wrt_alpha_2
                                            html  
    McCullagh_second_order_log_l_wrt_alpha_c
                                            html  
    McCullagh_second_order_log_l_wrt_beta_2
                                            html  
    McCullagh_second_order_log_l_wrt_c_2    html  
    McCullagh_second_order_log_l_wrt_delta_2
                                            html  
    McCullagh_second_order_log_l_wrt_delta_alpha
                                            html  
    McCullagh_second_order_log_l_wrt_delta_c
                                            html  
    McCullagh_second_order_log_l_wrt_delta_vec_2
                                            html  
    McCullagh_second_order_log_l_wrt_delta_vec_alpha
                                            html  
    McCullagh_second_order_log_l_wrt_delta_vec_c
                                            html  
    McCullagh_second_order_log_l_wrt_parms
                                            html  
    McCullagh_second_order_log_l_wrt_psi_2
                                            html  
    McCullagh_second_order_log_l_wrt_psi_alpha
                                            html  
    McCullagh_second_order_log_l_wrt_psi_c
                                            html  
    McCullagh_second_order_log_l_wrt_psi_delta
                                            html  
    McCullagh_second_order_log_l_wrt_psi_delta_vec
                                            html  
    McCullagh_second_order_omega_wrt_alpha_2
                                            html  
    McCullagh_second_order_omega_wrt_alpha_c
                                            html  
    McCullagh_second_order_omega_wrt_c_2    html  
    McCullagh_second_order_omega_wrt_delta_2
                                            html  
    McCullagh_second_order_omega_wrt_delta_alpha
                                            html  
    McCullagh_second_order_omega_wrt_delta_c
                                            html  
    McCullagh_second_order_omega_wrt_delta_vec_2
                                            html  
    McCullagh_second_order_omega_wrt_delta_vec_alpha
                                            html  
    McCullagh_second_order_omega_wrt_delta_vec_c
                                            html  
    McCullagh_second_order_omega_wrt_psi_2
                                            html  
    McCullagh_second_order_omega_wrt_psi_alpha
                                            html  
    McCullagh_second_order_omega_wrt_psi_c
                                            html  
    McCullagh_second_order_omega_wrt_psi_delta
                                            html  
    McCullagh_second_order_omega_wrt_psi_delta_vec
                                            html  
    McCullagh_second_order_pi_wrt_alpha_2   html  
    McCullagh_second_order_pi_wrt_alpha_c   html  
    McCullagh_second_order_pi_wrt_c_2       html  
    McCullagh_second_order_pi_wrt_delta_2   html  
    McCullagh_second_order_pi_wrt_delta_alpha
                                            html  
    McCullagh_second_order_pi_wrt_delta_c   html  
    McCullagh_second_order_pi_wrt_delta_vec_2
                                            html  
    McCullagh_second_order_pi_wrt_delta_vec_alpha
                                            html  
    McCullagh_second_order_pi_wrt_delta_vec_c
                                            html  
    McCullagh_second_order_pi_wrt_psi_2     html  
    McCullagh_second_order_pi_wrt_psi_alpha
                                            html  
    McCullagh_second_order_pi_wrt_psi_c     html  
    McCullagh_second_order_pi_wrt_psi_delta
                                            html  
    McCullagh_second_order_pi_wrt_psi_delta_vec
                                            html  
    McCullagh_update_parameters             html  
    McCullagh_v_inverse                     html  
    Schuster_compute_df                     html  
    Schuster_compute_pi                     html  
    Schuster_compute_starting_values        html  
    Schuster_derivative_log_l_wrt_kappa     html  
    Schuster_derivative_log_l_wrt_marginal_pi
                                            html  
    Schuster_derivative_log_l_wrt_v         html  
    Schuster_derivative_pi_wrt_kappa        html  
    Schuster_derivative_pi_wrt_marginal_pi
                                            html  
    Schuster_derivative_pi_wrt_v            html  
    Schuster_derivative_v_wrt_v             html  
    Schuster_enforce_constraints_on_v       html  
    Schuster_gradient                       html  
    Schuster_hessian                        html  
    Schuster_is_pi_valid                    html  
    Schuster_newton_raphson                 html  
    Schuster_second_deriv_log_l_wrt_kappa_2
                                            html  
    Schuster_second_deriv_log_l_wrt_kappa_v
                                            html  
    Schuster_second_deriv_log_l_wrt_marginal_pi_2
                                            html  
    Schuster_second_deriv_log_l_wrt_marginal_pi_kappa
                                            html  
    Schuster_second_deriv_log_l_wrt_marginal_pi_v
                                            html  
    Schuster_second_deriv_log_l_wrt_v_2     html  
    Schuster_second_deriv_pi_wrt_kappa_2    html  
    Schuster_second_deriv_pi_wrt_kappa_v    html  
    Schuster_second_deriv_pi_wrt_marginal_pi_2
                                            html  
    Schuster_second_deriv_pi_wrt_marginal_pi_kappa
                                            html  
    Schuster_second_deriv_pi_wrt_marginal_pi_v
                                            html  
    Schuster_second_deriv_pi_wrt_v_2        html  
    Schuster_solve_for_v                    html  
    Schuster_solve_for_v1                   html  
    Schuster_symmetric_rater_agreement_model
                                            html  
    Schuster_update                         html  
    Schuster_v_tilde                        html  
    Stuart_marginal_homogeneity             html  
    budget_actual                           html  
    budget_expected                         html  
    coal_g                                  html  
    constant_of_integration                 html  
    depression                              html  
    dogs                                    html  
    dreams                                  html  
    dumping                                 html  
    esophageal_cancer                       html  
    expand                                  html  
    expit                                   html  
    family_income                           html  
    gender_vision                           html  
    handle_max_i_i                          html  
    handle_max_i_k                          html  
    handle_max_k_k2                         html  
    handle_one_maximum                      html  
    handle_tied_below_maximum               html  
    handle_tied_maximum                     html  
    handle_untied_below_maximum             html  
    homicide_black_black                    html  
    homicide_black_white                    html  
    homicide_white_black                    html  
    homicide_white_white                    html  
    hypothalamus_1                          html  
    hypothalamus_2                          html  
    interference_12                         html  
    interference_control_1                  html  
    interference_control_2                  html  
    is_invertible                           html  
    is_missing_or_infinite                  html  
    kappa                                   html  
    likelihood_ratio_chisq                  html  
    loadRData                               html  
    log_Linear_create_log_n                 html  
    log_likelihood                          html  
    log_linear_add_all_diagonals            html  
    log_linear_append_column                html  
    log_linear_create_coefficient_names     html  
    log_linear_create_linear_by_linear      html  
    log_linear_equal_weight_agreement_design
                                            html  
    log_linear_fit                          html  
    log_linear_main_effect_design           html  
    log_linear_matrix_to_vector             html  
    log_linear_quasi_symmetry_model_design
                                            html  
    log_linear_remove_column                html  
    log_linear_symmetry_design              html  
    logit                                   html  
    mental_health                           html  
    model_i_column_theta                    html  
    model_i_effects                         html  
    model_i_fHat                            html  
    model_i_normalize_fHat                  html  
    model_i_row_column_odds_ratios          html  
    model_i_row_theta                       html  
    model_i_star_effects                    html  
    model_i_star_fHat                       html  
    model_i_star_update_theta               html  
    model_i_starting_values                 html  
    model_i_update_alpha                    html  
    model_i_update_beta                     html  
    model_i_update_delta                    html  
    model_i_update_gamma                    html  
    model_i_zeta                            html  
    model_ii_effects                        html  
    model_ii_fHat                           html  
    model_ii_ksi                            html  
    model_ii_star_effects                   html  
    model_ii_star_fHat                      html  
    model_ii_star_update_phi                html  
    model_ii_starting_values                html  
    model_ii_update_alpha                   html  
    model_ii_update_beta                    html  
    model_ii_update_rho                     html  
    model_ii_update_sigma                   html  
    movies                                  html  
    new_orleans_data                        html  
    null_association_fHat                   html  
    occupational_status                     html  
    paranoia                                html  
    pearson_chisq                           html  
    radiology                               html  
    social_status                           html  
    social_status2                          html  
    taste                                   html  
    teachers                                html  
    teaching_style                          html  
    tonsils                                 html  
    tv                                      html  
    uniform_association_fHat                html  
    uniform_association_update_theta        html  
    var_kappa                               html  
    var_weighted_kappa                      html  
    vision_data                             html  
    vision_data_men                         html  
    von_Eye_diagonal                        html  
    von_Eye_diagonal_linear_by_linear       html  
    von_Eye_equal_weight_diagonal_linear    html  
    von_Eye_equal_weighted_diagonal         html  
    von_Eye_linear_by_linear                html  
    von_Eye_main_effect                     html  
    von_Eye_weight_by_response_category_design
                                            html  
    weighted_cov                            html  
    weighted_kappa                          html  
    weighted_var                            html  
    winnipeg_data                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ordinalTables)