Install log for 'opentimsr'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘opentimsr’ ...
** this is package ‘opentimsr’ version ‘1.2.0’
** package ‘opentimsr’ successfully unpacked and MD5 sums checked
** using staged installation
Using ZSTD_CFLAGS=
Using ZSTD_LIBS=-lzstd
** libs
specified C++20
using C++ compiler: ‘g++-16 (Debian 16.2.0-3) 16.2.0’
using C++20
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0Dru1z/R.INSTALL182be561a3184c/opentimsr/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./opentims_core -DOPENTIMS_BUILDING_R  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./opentims_core -DOPENTIMS_BUILDING_R  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Rinterface.cpp -o Rinterface.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./opentims_core -DOPENTIMS_BUILDING_R  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c converters.cpp -o converters.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./opentims_core -DOPENTIMS_BUILDING_R  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c opentims.cpp -o opentims.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./opentims_core -DOPENTIMS_BUILDING_R  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c scan2inv_ion_mobility_converter.cpp -o scan2inv_ion_mobility_converter.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./opentims_core -DOPENTIMS_BUILDING_R  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c so_manager.cpp -o so_manager.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./opentims_core -DOPENTIMS_BUILDING_R  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c thread_mgr.cpp -o thread_mgr.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I./opentims_core -DOPENTIMS_BUILDING_R  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c tof2mz_converter.cpp -o tof2mz_converter.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o opentimsr.so RcppExports.o Rinterface.o converters.o opentims.o scan2inv_ion_mobility_converter.o so_manager.o thread_mgr.o tof2mz_converter.o -lzstd -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0Dru1z/R.INSTALL182be561a3184c/opentimsr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0Dru1z/R.INSTALL182be561a3184c/opentimsr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0Dru1z/R.INSTALL182be561a3184c/opentimsr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-opentimsr/00new/opentimsr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘opentimsr’
    finding HTML links ... done
    CloseTIMS                               html  
    MS1                                     html  
    OpenTIMS-class                          html  
    OpenTIMS                                html  
    download_bruker_proprietary_code        html  
    explore.tdf.tables                      html  
    get_separate_frames                     html  
    length-OpenTIMS-method                  html  
    min_max_measurements                    html  
    opentims_set_threads                    html  
    peaks_per_frame_cnts                    html  
    query                                   html  
    query_slice                             html  
    range-OpenTIMS-method                   html  
    retention_times                         html  
    rt_query                                html  
    setup_bruker_so                         html  
    setup_opensource                        html  
    sub-OpenTIMS-method                     html  
    table2df                                html  
    tables_names                            html  
    use_inv_ion_mobility_lookup             html  
    use_mz_lookup                           html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (opentimsr)