* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘nprcgenekeepr’ ...
** this is package ‘nprcgenekeepr’ version ‘1.0.7’
** package ‘nprcgenekeepr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘nprcgenekeepr’
finding HTML links ... done
addAnimalsWithNoRelative html
addBackSecondParents html
addGenotype html
addIdRecords html
addParents html
addSexAndAgeToGroup html
addUIds html
alleleFreq html
assignAlleles html
calcA html
calcAge html
calcFE html
calcFEFG html
calcFG html
calcGU html
calcRetention html
calculateSexRatio html
checkChangedColsLst html
checkErrorLst html
checkGenotypeFile html
checkParentAge html
checkRequiredCols html
chooseAlleles html
chooseDate html
convertAncestry html
convertDate html
convertFromCenter html
convertRelationships html
convertSexCodes html
convertStatusCodes html
correctParentSex html
countFirstOrder html
countKinshipValues html
countLoops html
createExampleFiles html
createPedTree html
createSimKinships html
create_wkbk html
cumulateSimKinships html
dataframe2string html
exampleNprcgenekeeprConfig html
examplePedigree html
fillGroupMembersWithSexRatio html
filterKinMatrix html
filterPairs html
filterReport html
filterThreshold html
finalRpt html
findGeneration html
findLoops html
findOffspring html
findPedigreeNumber html
fixColumnNames html
focalAnimals html
geneDrop html
getAncestors html
getAnimalsWithHighKinship html
getChangedColsTab html
getConfigFileName html
getCurrentAge html
getDateErrorsAndConvertDatesInPed html
getDatedFilename html
getDemographics html
getEmptyErrorLst html
getErrorTab html
getFocalAnimalPed html
getGVGenotype html
getGVPopulation html
getGenotypes html
getIdsWithOneParent html
getIncludeColumns html
getLkDirectAncestors html
getLkDirectRelatives html
getLogo html
getOffspring html
getParents html
getPedDirectRelatives html
getPedMaxAge html
getPedigree html
getPossibleCols html
getPotentialParents html
getPotentialSires html
getProbandPedigree html
getPyramidAgeDist html
getPyramidPlot html
getRequiredCols html
getSiteInfo html
getTokenList html
getVersion html
get_and_or_list html
get_elapsed_time_str html
groupAddAssign html
hasBothParents html
hasGenotype html
headerDisplayNames html
is_valid_date_str html
kinMatrix2LongForm html
kinship html
kinshipMatricesToKValues html
kinshipMatrixToKValues html
lacy1989Ped html
lacy1989PedAlleles html
makeCEPH html
makeExamplePedigreeFile html
makeGroupMembers html
makeGrpNum html
makeRelationClassesTable html
makeSimPed html
mapIdsToObfuscated html
meanKinship html
nprcgenekeepr-package html
nprcgenekeepr html
obfuscateDate html
obfuscateId html
obfuscatePed html
offspringCounts html
ped1Alleles html
pedDuplicateIds html
pedFemaleSireMaleDam html
pedGood html
pedInvalidDates html
pedMissingBirth html
pedOne html
pedSameMaleIsSireAndDam html
pedSix html
pedWithGenotype html
pedWithGenotypeReport html
print html
qcBreeders html
qcPed html
qcPedGvReport html
qcStudbook html
rankSubjects html
removeAutoGenIds html
removeDuplicates html
removeEarlyDates html
removePotentialSires html
removeUninformativeFounders html
removeUnknownAnimals html
reportGV html
rhesusGenotypes html
rhesusPedigree html
runGeneKeepR html
saveDataframesAsFiles html
setExit html
setPopulation html
set_seed html
smallPed html
smallPedTree html
summarizeKinshipValues html
summary html
toCharacter html
trimPedigree html
withinIntegerRange html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nprcgenekeepr)