* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘normalblockr’ ...
** this is package ‘normalblockr’ version ‘0.3.0’
** package ‘normalblockr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-16 (Debian 16.2.0-3) 16.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Mi9Kj/R.INSTALLc66f8600b831e/normalblockr/src'
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_WARN_LEVEL=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_WARN_LEVEL=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c exports.cpp -o exports.o
In file included from zi_normal_block_var_types.h:4,
from exports.cpp:8:
zi_normal_block_var_known_clusters.h: In instantiation of ‘ZINormalBlockVarKnownClusters<NoisePolicy>::ZINormalBlockVarKnownClusters(const ZINormalBlockData&, const arma::mat&, const arma::mat&, const arma::vec&, const arma::mat&, double, const arma::mat&) [with NoisePolicy = ZIDiagonalNoise; arma::mat = arma::Mat<double>; arma::vec = arma::Col<double>]’:
exports.cpp:196:113: required from here
196 | zi_norm_block_var_cov_diag_noise_known_clusters model(data, C, B0, dm1_0, Omega0, sparsity, sparsity_weights);
| ^
zi_normal_block_var_known_clusters.h:77:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
77 | for (arma::uword i = 0; i < data.n; ++i) Gamma_.slice(i) = arma::eye(C.n_cols, C.n_cols);
| ~~^~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘ZINormalBlockVarKnownClusters<NoisePolicy>::ZINormalBlockVarKnownClusters(const ZINormalBlockData&, const arma::mat&, const arma::mat&, const arma::vec&, const arma::mat&, double, const arma::mat&) [with NoisePolicy = ZISphericalNoise; arma::mat = arma::Mat<double>; arma::vec = arma::Col<double>]’:
exports.cpp:200:118: required from here
200 | zi_norm_block_var_cov_spherical_noise_known_clusters model(data, C, B0, dm1_0, Omega0, sparsity, sparsity_weights);
| ^
zi_normal_block_var_known_clusters.h:77:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
77 | for (arma::uword i = 0; i < data.n; ++i) Gamma_.slice(i) = arma::eye(C.n_cols, C.n_cols);
| ~~^~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘double ZINormalBlockVarKnownClusters<NoisePolicy>::objective() const [with NoisePolicy = ZISphericalNoise]’:
zi_normal_block_var_known_clusters.h:85:10: required from here
85 | double objective() const override {
| ^~~~~~~~~
zi_normal_block_var_known_clusters.h:93:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
93 | for (arma::uword i = 0; i < zi_data_.n; ++i) {
| ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘void ZINormalBlockVarKnownClusters<NoisePolicy>::E_step() [with NoisePolicy = ZISphericalNoise]’:
zi_normal_block_var_known_clusters.h:34:8: required from here
34 | void E_step() override {
| ^~~~~~
zi_normal_block_var_known_clusters.h:47:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
47 | for (arma::uword i = 0; i < zi_data_.n; ++i) {
| ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘void ZINormalBlockVarKnownClusters<NoisePolicy>::M_step() [with NoisePolicy = ZISphericalNoise]’:
zi_normal_block_var_known_clusters.h:54:8: required from here
54 | void M_step() override {
| ^~~~~~
zi_normal_block_var_known_clusters.h:61:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
61 | for (arma::uword i = 0; i < zi_data_.n; ++i) CgC.row(i) = (C_ * Gamma_.slice(i).diag()).t();
| ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘double ZINormalBlockVarKnownClusters<NoisePolicy>::objective() const [with NoisePolicy = ZIDiagonalNoise]’:
zi_normal_block_var_known_clusters.h:85:10: required from here
85 | double objective() const override {
| ^~~~~~~~~
zi_normal_block_var_known_clusters.h:93:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
93 | for (arma::uword i = 0; i < zi_data_.n; ++i) {
| ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘void ZINormalBlockVarKnownClusters<NoisePolicy>::E_step() [with NoisePolicy = ZIDiagonalNoise]’:
zi_normal_block_var_known_clusters.h:34:8: required from here
34 | void E_step() override {
| ^~~~~~
zi_normal_block_var_known_clusters.h:47:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
47 | for (arma::uword i = 0; i < zi_data_.n; ++i) {
| ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘void ZINormalBlockVarKnownClusters<NoisePolicy>::M_step() [with NoisePolicy = ZIDiagonalNoise]’:
zi_normal_block_var_known_clusters.h:54:8: required from here
54 | void M_step() override {
| ^~~~~~
zi_normal_block_var_known_clusters.h:61:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
61 | for (arma::uword i = 0; i < zi_data_.n; ++i) CgC.row(i) = (C_ * Gamma_.slice(i).diag()).t();
| ~~^~~~~~~~~~~~
g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o normalblockr.so RcppExports.o exports.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Mi9Kj/R.INSTALLc66f8600b831e/normalblockr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Mi9Kj/R.INSTALLc66f8600b831e/normalblockr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Mi9Kj/R.INSTALLc66f8600b831e/normalblockr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-normalblockr/00new/normalblockr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘normalblockr’
finding HTML links ... done
BIC.NormalBlockBase html
BIC.NormalBlockCollection html
NB_control html
NormalBlockBase html
NormalBlockCollection html
NormalBlockCollectionClusters html
NormalBlockCollectionClustersSparsity html
NormalBlockCollectionSparsity html
NormalBlockData html
NormalBlockMeanBase html
NormalBlockMeanCollectionClusters html
NormalBlockMeanCollectionClustersSparsity
html
NormalBlockMeanCollectionSparsity html
NormalBlockMeanKnownClusters html
NormalBlockMeanUnknownClusters html
NormalBlockVarBase html
NormalBlockVarCollectionClusters html
NormalBlockVarCollectionClustersSparsity
html
NormalBlockVarCollectionSparsity html
NormalBlockVarKnownClusters html
NormalBlockVarUnknownClusters html
ZINormalBlockMeanKnownClusters html
ZINormalBlockMeanUnknownClusters html
ZINormalBlockVarKnownClusters html
ZINormalBlockVarUnknownClusters html
brca_rppa html
coef.NormalBlockBase html
fitted.NormalBlockBase html
generate_normal_block_mean_data html
generate_normal_block_var_data html
get_model html
isNB html
logLik.NormalBlockBase html
logLik.NormalBlockCollection html
normal_block html
normal_block_sequential html
normalblockr-package html
onema html
plot.NormalBlockBase html
predict.NormalBlockBase html
print.NormalBlockBase html
print.NormalBlockCollection html
print.normal_block_sequential html
print.summary.NormalBlockBase html
print.summary.NormalBlockCollection html
sigma.NormalBlockBase html
summary.NormalBlockBase html
summary.NormalBlockCollection html
university html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (normalblockr)