* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘noisyr’ ...
** this is package ‘noisyr’ version ‘1.0.0’
** package ‘noisyr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘noisyr’
    finding HTML links ... done
    calculate_expression_profile            html  
    calculate_expression_similarity_counts
                                            html  
    calculate_expression_similarity_transcript
                                            html  
    calculate_first_minimum_density         html  
    calculate_noise_threshold               html  
    calculate_noise_threshold_method_statistics
                                            html  
    cast_gtf_to_genes                       html  
    cast_matrix_to_numeric                  html  
    filter_genes_transcript                 html  
    get_methods_calculate_noise_threshold   html  
    get_methods_correlation_distance        html  
    noisyr                                  html  
    noisyr_counts                           html  
    noisyr_transcript                       html  
    optimise_window_length                  html  
    plot_expression_similarity              html  
    remove_noise_from_bams                  html  
    remove_noise_from_matrix                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (noisyr)