* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘nlmixr2extra’ ...
** this is package ‘nlmixr2extra’ version ‘5.1.0’
** package ‘nlmixr2extra’ successfully unpacked and MD5 sums checked
** using staged installation
R version 4.6.1 Patched (2026-07-12 r90255) -- "Happy Hop"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
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You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
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> if (!dir.exists("data")) {
+ dir.create("data")
+ }
>
> .in <- suppressWarnings(readLines("src/Makevars.in"))
> if (.Platform$OS.type == "windows") {
+ .makevars <- file("src/Makevars.win", "wb")
+ .i <- "I"
+ } else {
+ .makevars <- file("src/Makevars", "wb")
+ if (any(grepl("Pop!_OS", utils::osVersion, fixed=TRUE))) {
+ .i <- "isystem"
+ } else {
+ .i <- "I"
+ }
+ }
>
> writeLines(gsub("@ISYSTEM@", .i, .in),
+ .makevars)
> close(.makevars)
>
> proc.time()
user system elapsed
0.197 0.041 0.224
--------[begin src/Makevars]--------
## -*- mode: makefile; -*-
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -DARMA_USE_CXX11 -DARMA_USE_CURRENT
PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
--------[end src/Makevars]--------
** libs
using C compiler: ‘gcc-15 (Debian 15.3.0-1) 15.3.0’
using C++ compiler: ‘g++-15 (Debian 15.3.0-1) 15.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTedf8p/R.INSTALL3c6c4b7fbb578e/nlmixr2extra/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_USE_CXX11 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
gcc-15 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_USE_CXX11 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c preCondInv.cpp -o preCondInv.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o nlmixr2extra.so RcppExports.o init.o preCondInv.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTedf8p/R.INSTALL3c6c4b7fbb578e/nlmixr2extra/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTedf8p/R.INSTALL3c6c4b7fbb578e/nlmixr2extra/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTedf8p/R.INSTALL3c6c4b7fbb578e/nlmixr2extra/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-nlmixr2extra/00new/nlmixr2extra/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘nlmixr2extra’
finding HTML links ... done
aaaNlmixr2ExtraCRAN html
adaptivelassoCoefficients html
addAllEtas html
addCatCovariates html
addCovariate html
addData2Rx html
addorremoveCovariate html
adjustedlassoCoefficients html
bootplot html
bootstrapFit html
buildcovInfo html
buildupatedUI html
covarSearchAuto html
dot-nlmixrFormulaDataPrep html
dot-nlmixrFormulaExpandStartParam html
dot-nlmixrFormulaParser html
dot-nlmixrFormulaParserRanef html
dot-nlmixrFormulaSetupIniFixed html
dot-renameOrOverwrite html
extractEqHelper.if html
fixedControl html
foldgen html
horseshoeSummardf html
iivSearch html
isLinearizeMatch html
knit_print.nlmixr2FitCore html
lassoCoefficients html
lassoSummardf html
linModGen html
linearize html
linearizeErrorLines html
linearizePlot html
llpControl html
nlmixr2extra-package html
nlmixrFormula html
normalizedData html
optimUnisampling html
preconditionFit html
print.linIIVSearch html
profile.nlmixr2FitCore html
profileFixed html
profileLlp html
profileNlmixr2FitCoreRet html
reexports html
regularmodel html
rerunTopN html
resSearch html
theoFitOde html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nlmixr2extra)