* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘neurobase’ ...
** this is package ‘neurobase’ version ‘1.32.4’
** package ‘neurobase’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘neurobase’
finding HTML links ... done
applyEmptyImageDimensions-methods html
boxplot.nifti html
breaker html
check_mask html
check_mask_fail html
check_nifti-methods html
check_nifti_header-methods html
check_outfile html
checkimg-methods html
checknii-methods html
checkniigz-methods html
cog html
colorbar html
copyNIfTIHeader html
Rd warning: copyNIfTIHeader.Rd:24: missing link ‘dropImageDimension’
Rd warning: copyNIfTIHeader.Rd:26: missing link ‘dropImageDimension’
Rd warning: copyNIfTIHeader.Rd:29: missing link ‘dropImageDimension’
Rd warning: copyNIfTIHeader.Rd:32: missing link ‘nifti’
cut.nifti html
datatype html
Rd warning: datatype.Rd:26: missing link ‘convert.datatype’
Rd warning: datatype.Rd:29: missing link ‘convert.bitpix’
density.nifti html
dicer html
double_ortho html
Rd warning: double_ortho.Rd:34: missing link ‘orthographic’
Rd warning: double_ortho.Rd:38: missing link ‘orthographic’
dropEmptyImageDimensions html
emptyImageDimensionsMask html
ensure_array html
Rd warning: ensure_array.Rd:10: missing link ‘nifti’
fast_dice_tab html
fast_readnii html
Rd warning: fast_readnii.Rd:20: missing link ‘readNifti’
Rd warning: fast_readnii.Rd:14: missing link ‘drop_img_dim’
file_imgext html
finite_img-methods html
flip_img html
getEmptyImageDimensions html
hist.nifti html
images2matrix html
img_colour_df html
img_indices html
img_list_to_ts html
Rd warning: img_list_to_ts.Rd:17: missing link ‘nifti’
Rd warning: img_list_to_ts.Rd:20: missing link ‘nifti’
img_ts_to_df html
Rd warning: img_ts_to_df.Rd:10: missing link ‘nifti’
Rd warning: img_ts_to_df.Rd:14: missing link ‘nifti’
img_ts_to_list html
Rd warning: img_ts_to_list.Rd:10: missing link ‘nifti’
Rd warning: img_ts_to_list.Rd:18: missing link ‘nifti’
Rd warning: img_ts_to_list.Rd:27: missing link ‘nifti’
img_ts_to_matrix html
Rd warning: img_ts_to_matrix.Rd:10: missing link ‘nifti’
Rd warning: img_ts_to_matrix.Rd:14: missing link ‘nifti’
maskEmptyImageDimensions-methods html
mask_img html
mask_vals-methods html
mean.nifti html
minmax_img-methods html
multi_overlay html
newnii html
niftiarr html
nii.stub html
orient_rpi html
ortho2 html
Rd warning: ortho2.Rd:149: missing link ‘orthographic’
Rd warning: ortho2.Rd:185: missing link ‘orthographic’
ortho_diff html
parse_img_ext html
quantile.nifti html
quantile_img html
random_nifti html
Rd warning: random_nifti.Rd:12: missing link ‘nifti’
randomize_mask html
readNIfTI2 html
Rd warning: readNIfTI2.Rd:42: missing link ‘readNIfTI’
Rd warning: readNIfTI2.Rd:21: missing link ‘readNIfTI’
Rd warning: readNIfTI2.Rd:23: missing link ‘readNIfTI’
Rd warning: readNIfTI2.Rd:27: missing link ‘drop_img_dim’
Rd warning: readNIfTI2.Rd:31: missing link ‘readNIfTI’
read_rpi html
remake_img html
Rd warning: remake_img.Rd:26: missing link ‘nifti’
Rd warning: remake_img.Rd:12: missing link ‘nifti’
Rd warning: remake_img.Rd:14: missing link ‘nifti’
Rd warning: remake_img.Rd:22: missing link ‘nifti’
remap_filename html
replaceEmptyImageDimensions-methods html
replace_dropped_dimensions html
Rd warning: replace_dropped_dimensions.Rd:19: missing link ‘nifti’
replace_outside_surface html
rescale_img html
Rd warning: rescale_img.Rd:38: missing link ‘drop_img_dim’
reverse_orient_rpi html
robust_window html
same_dims html
separate_img-methods html
slice_colour_df html
subset_dti-methods html
tempimg html
Rd warning: tempimg.Rd:31: missing link ‘drop_img_dim’
window_img html
writeNIfTI2 html
Rd warning: writeNIfTI2.Rd:44: missing link ‘writeNIfTI’
Rd warning: writeNIfTI2.Rd:22: missing link ‘writeNIfTI’
Rd warning: writeNIfTI2.Rd:30: missing link ‘writeNIfTI’
Rd warning: writeNIfTI2.Rd:32: missing link ‘drop_img_dim’
Rd warning: writeNIfTI2.Rd:34: missing link ‘writeNIfTI’
write_nifti html
Rd warning: write_nifti.Rd:14: missing link ‘writeNifti’
xyz html
zero_pad html
zlimmer html
zscore_img html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (neurobase)