* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘netmhc2pan’ ...
** this is package ‘netmhc2pan’ version ‘1.3.2’
** package ‘netmhc2pan’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘netmhc2pan’
    finding HTML links ... done
    capitalize_first_char                   html  
    check_alleles                           html  
    check_can_create_file                   html  
    check_fasta_file_sequence_lengths       html  
    check_netmhc2pan_bin_url                html  
    check_netmhc2pan_data_url               html  
    check_netmhc2pan_installation           html  
    create_temp_fasta_filename              html  
    create_temp_xls_filename                html  
    default_params_doc                      html  
    download_netmhc2pan_bin                 html  
    get_default_netmhc2pan_bin_path         html  
    get_default_netmhc2pan_bin_tarfile_path
                                            html  
    get_default_netmhc2pan_folder           html  
    get_default_netmhc2pan_subfolder        html  
    get_default_netmhc2pan_version          html  
    get_netmhc2pan_alleles                  html  
    get_netmhc2pan_archive_filename         html  
    get_netmhc2pan_bin_url                  html  
    get_netmhc2pan_data_url                 html  
    get_netmhc2pan_url                      html  
    install_netmhc2pan                      html  
    install_netmhc2pan_bin                  html  
    install_netmhc2pan_bin_from_file        html  
    install_netmhc2pan_data                 html  
    install_netmhc2pan_data_from_file       html  
    install_netmhc2pan_from_files           html  
    is_netmhc2pan_bin_installed             html  
    is_netmhc2pan_data_installed            html  
    is_netmhc2pan_haplotype                 html  
    is_netmhc2pan_installed                 html  
    is_netmhc2pan_set_up                    html  
    is_on_appveyor                          html  
    is_on_ci                                html  
    is_on_github_actions                    html  
    is_on_travis                            html  
    is_tcsh_installed                       html  
    is_url_valid                            html  
    netmhc2pan                              html  
    netmhc2pan_report                       html  
    netmhc2pan_self_test                    html  
    predict_ic50                            html  
    predict_ic50s                           html  
    read_netmhc2pan_xls_output              html  
    run_netmhc2pan                          html  
    set_up_netmhc2pan                       html  
    to_netmhc2pan_name                      html  
    uninstall_netmhc2pan                    html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (netmhc2pan)