* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘nerfplus’ ...
** this is package ‘nerfplus’ version ‘1.0.0’
** package ‘nerfplus’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16.2.0-3) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOBe0Hv/R.INSTALL137458eae72b7/nerfplus/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c psi.cpp -o psi.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rnc.cpp -o rnc.o
rnc.cpp: In function ‘arma::mat RNC_nodeids_LS_Naive(arma::mat, arma::mat, arma::sp_mat, arma::sp_mat, arma::mat)’:
rnc.cpp:202:7: warning: unused variable ‘n’ [-Wunused-variable]
202 | int n = X.n_rows;
| ^
rnc.cpp: In function ‘Rcpp::List rnc_nodeids_solver_naive(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, double)’:
rnc.cpp:223:7: warning: unused variable ‘n’ [-Wunused-variable]
223 | int n = Xmat.n_rows;
| ^
rnc.cpp: In function ‘Rcpp::List rnc_solver_path_predict(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, double, Rcpp::List, bool)’:
rnc.cpp:326:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
326 | for (int j = 0; j < alphas.n_cols; ++j) {
| ~~^~~~~~~~~~~~~~~
rnc.cpp: In function ‘arma::mat RNC_weighted_LS_BlockSolve(arma::mat, arma::mat, arma::sp_mat, arma::mat, arma::vec, double)’:
rnc.cpp:428:7: warning: unused variable ‘n’ [-Wunused-variable]
428 | int n = X.n_rows;
| ^
rnc.cpp: In function ‘Rcpp::List rnc_logistic_solver(Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, double, Rcpp::NumericMatrix, int, double, bool)’:
rnc.cpp:532:7: warning: unused variable ‘p’ [-Wunused-variable]
532 | int p = Xmat.n_cols;
| ^
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c tree_paths.cpp -o tree_paths.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o nerfplus.so RcppExports.o psi.o rnc.o tree_paths.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOBe0Hv/R.INSTALL137458eae72b7/nerfplus/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOBe0Hv/R.INSTALL137458eae72b7/nerfplus/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOBe0Hv/R.INSTALL137458eae72b7/nerfplus/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-nerfplus/00new/nerfplus/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘nerfplus’
finding HTML links ... done
add_border html
add_spinner html
add_tooltip html
add_tooltip_icon html
apply_post_rf_preprocessing html
checkbox html
checkbox_group html
css_styler html
display_inline html
dummy_code html
example_data html
fileInputModule html
fit_network_embedding html
get_feature_importances html
get_forest_paths html
get_icon html
get_icons html
get_loo html
get_tree_paths html
hr_short html
iconRadioGroupUI html
interpret_nerfplus html
make_laplacian html
make_sparse_laplacian html
material_switch html
nerfplus html
nerfplus_augmentation html
nerfplus_conformal html
nerfplus_cv html
nerfplus_preprocessing html
nerfplus_psi html
oos_network_embedding html
options_dropdown html
picker_input html
plotModule html
plotOptionsUI html
predict.nerfplus html
predict.rnc html
predict_rnc_linear html
predict_rnc_logistic html
prettyBox html
prettyDashboardHeader html
radio_buttons html
radio_group_buttons html
reset_button html
reset_inputs html
rnc html
rnc_cv html
rnc_linear html
rnc_linear_path html
rnc_logistic html
rnc_logistic_path html
rnc_logistic_scaled_laplacian html
rsq_narm_vec html
run_app html
run_button html
selectVizUI html
set_margins html
shared_args html
shared_args_util html
tableModule html
tableOptionsUI html
tree_local_fi html
tree_mdiplus_fi html
tree_permute_fi html
use_pretty_style html
vspace html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nerfplus)