* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘neotoma2’ ...
** package ‘neotoma2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘toJSON’ in package ‘neotoma2’
Creating a generic function for ‘write.csv’ from package ‘utils’ in package ‘neotoma2’
** help
*** installing help indices
converting help for package ‘neotoma2’
finding HTML links ... done
add_chronology-collunit-chronology-data.frame-method
html
add_chronology html
as.data.frame-authors-method html
as.data.frame-chronologies-method html
as.data.frame-chronology-method html
as.data.frame-collunit-method html
as.data.frame-collunits-method html
as.data.frame-contact-method html
as.data.frame-contacts-method html
as.data.frame-dataset-method html
as.data.frame-datasets-method html
as.data.frame-publication-method html
as.data.frame-publications-method html
as.data.frame-site-method html
as.data.frame-sites-method html
as.data.frame-specimen-method html
as.data.frame-specimens-method html
as.list-sites-method html
author-class html
authors-class html
build_chron html
build_collunits html
build_dataset html
build_sample html
build_sites html
build_specimen html
c-chronologies-method html
c-collunits-method html
c-contact-method html
c-contacts-method html
c-datasets-method html
c-missingOrNULL-method html
c-publications-method html
c-sites-method html
c-specimens-method html
cash-chronologies-method html
cash-chronology-method html
cash-collunit-method html
cash-collunits-method html
cash-contact-method html
cash-contacts-method html
cash-dataset-method html
cash-datasets-method html
cash-publication-method html
cash-sample-method html
cash-samples-method html
cash-set-chronology-method html
cash-set-collunit-method html
cash-set-dataset-method html
cash-set-site-method html
cash-set-specimen-method html
cash-site-method html
cash-sites-method html
cash-specimen-method html
cash-specimens-method html
check_args html
check_contacts html
check_contacts.contacts html
chroncontrols-site-method html
chroncontrols-sites-method html
chroncontrols html
chronologies-class html
chronologies-collunit-method html
chronologies-collunits-method html
chronologies-site-method html
chronologies-sites-method html
chronologies html
chronology-class html
cite_data-site-method html
cite_data-sites-method html
cite_data html
collunit-class html
collunits-class html
collunits-site-method html
collunits-sites-method html
collunits html
contact-class html
contacts-class html
coordinates-sites-method html
coordinates html
dataset-class html
datasets-class html
datasets-collunit-method html
datasets-collunits-method html
datasets-site-method html
datasets-sites-method html
datasets html
doi-publication-method html
doi-site-method html
doi-sites-method html
doi html
filter html
filter.sites html
get_contacts html
get_contacts.default html
get_contacts.numeric html
get_datasets html
get_datasets.default html
get_datasets.numeric html
get_datasets.site html
get_datasets.sites html
get_downloads html
get_downloads.character html
get_downloads.numeric html
get_downloads.sites html
get_manual html
get_publications html
get_publications.default html
get_publications.numeric html
get_publications.publication html
get_publications.publications html
get_sites html
get_sites.default html
get_sites.numeric html
get_sites.sites html
get_specimens html
get_specimens.default html
get_specimens.numeric html
get_specimens.sites html
get_stats html
get_table html
getids html
getids.collunit html
getids.collunits html
getids.site html
getids.sites html
length-chronologies-method html
length-collunits-method html
length-datasets-method html
length-publications-method html
length-samples-method html
length-sites-method html
length-specimens-method html
missingOrNULL-class html
names-collunit-method html
names-contact-method html
names-dataset-method html
names-publication-method html
names-publications-method html
names-site-method html
names-specimen-method html
newURL html
parseURL html
parse_site html
parsebody html
pingNeotoma html
pipe html
plot-sites-method html
plotLeaflet-site-method html
plotLeaflet-sites-method html
plotLeaflet html
publication-class html
publications-class html
repositories-class html
repository-class html
sample-class html
samples-class html
samples-collunit-method html
samples-collunits-method html
samples-site-method html
samples-sites-method html
samples html
selectMatch-publication-logical-method
html
selectMatch-publication-numeric-method
html
selectMatch html
set_chronology html
set_collunit html
set_contact html
set_dataset html
set_default-chronologies-method html
set_default html
set_publications html
set_sample html
set_server html
set_site html
show-collunit-method html
show-collunits-method html
show-contact-method html
show-contacts-method html
show-dataset-method html
show-datasets-method html
show-publication-method html
show-publications-method html
show-site-method html
show-sites-method html
show-specimen-method html
show-specimens-method html
showMatch-publication-method html
showMatch html
site-class html
sites-class html
specimen-class html
specimens-class html
specimens-collunit-method html
specimens-collunits-method html
specimens-site-method html
specimens-sites-method html
specimens html
sub-collunits-numeric-method html
sub-datasets-numeric-method html
sub-site-character-method html
sub-site-numeric-method html
sub-sites-numeric-method html
sub-specimens-numeric-method html
sub-sub-chronologies-numeric-method html
sub-sub-collunits-numeric-method html
sub-sub-contacts-numeric-method html
sub-sub-datasets-numeric-method html
sub-sub-publications-numeric-method html
sub-sub-samples-numeric-method html
sub-sub-sites-numeric-method html
sub-sub-specimens-numeric-method html
sub-subset-collunits-ANY-ANY-ANY-method
html
sub-subset-datasets-ANY-ANY-ANY-method
html
sub-subset-publications-ANY-ANY-ANY-method
html
sub-subset-sites-ANY-ANY-ANY-method html
sub-subset-specimens-ANY-ANY-ANY-method
html
subset-collunit-character-ANY-ANY-method
html
subset-collunit-numeric-ANY-ANY-method
html
subset-dataset-character-ANY-ANY-method
html
subset-dataset-numeric-ANY-ANY-method html
subset-site-character-ANY-ANY-method html
subset-site-numeric-ANY-ANY-method html
subset-specimen-character-ANY-ANY-method
html
subset-specimen-numeric-ANY-ANY-method
html
summary-sites-method html
taxa-collunit-method html
taxa-collunits-method html
taxa-site-method html
taxa-sites-method html
taxa html
toJSON-sites-method html
toJSON html
toWide html
write.csv-chronologies-method html
write.csv-collunits-method html
write.csv-datasets-method html
write.csv-sites-method html
write.csv-specimens-method html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (neotoma2)