* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘neotoma2’ ...
** this is package ‘neotoma2’ version ‘1.0.9’
** package ‘neotoma2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘neotoma2’
    finding HTML links ... done
    add_chronology                          html  
    as.data.frame                           html  
    author_classes                          html  
    c                                       html  
    cash-set                                html  
    cash                                    html  
    check_contacts                          html  
    chroncontrols-site-method               html  
    chroncontrols-sites-method              html  
    chroncontrols                           html  
    chronologies-collunit-method            html  
    chronologies                            html  
    chronologies_classes                    html  
    cite_data-sites-method                  html  
    cite_data                               html  
    clean                                   html  
    collunits-sites-method                  html  
    collunits                               html  
    collunits_classes                       html  
    contacts_classes                        html  
    coordinates-sites-method                html  
    coordinates                             html  
    datasets-collunits-method               html  
    datasets                                html  
    datasets_classes                        html  
    doi-sites-method                        html  
    doi                                     html  
    filter                                  html  
    get_contacts                            html  
    get_datasets                            html  
    get_documentation                       html  
    get_downloads                           html  
    get_manual                              html  
    get_params                              html  
    get_publications                        html  
    get_sites                               html  
    get_speleothems                         html  
    get_stats                               html  
    get_table                               html  
    get_taxa                                html  
    get_taxon                               html  
    getids                                  html  
    length                                  html  
    missingOrNULL-class                     html  
    names                                   html  
    pingNeotoma                             html  
    pipe                                    html  
    plot                                    html  
    plotLeaflet-sites-method                html  
    plotLeaflet                             html  
    publications_classes                    html  
    repositories_classes                    html  
    samples-sites-method                    html  
    samples                                 html  
    samples_classes                         html  
    set_chronology                          html  
    set_collunit                            html  
    set_contact                             html  
    set_dataset                             html  
    set_default-chronologies-method         html  
    set_default                             html  
    set_publication                         html  
    set_sample                              html  
    set_server                              html  
    set_site                                html  
    set_speleothem                          html  
    show                                    html  
    sites_classes                           html  
    specimens_classes                       html  
    speleothemdetails-sites-method          html  
    speleothemdetails                       html  
    speleothems-sites-method                html  
    speleothems                             html  
    speleothems_classes                     html  
    sub-sub                                 html  
    sub-subset                              html  
    sub                                     html  
    subset                                  html  
    summary-sites-method                    html  
    taxa-sites-method                       html  
    taxa                                    html  
    taxa_classes                            html  
    toWide                                  html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (neotoma2)