* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ncvreg’ ...
** package ‘ncvreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeJHMlq/R.INSTALL1aebed36f86886/ncvreg/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c cox-dh.c -o cox-dh.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c gaussian.c -o gaussian.o
gaussian.c: In function ‘cdfit_gaussian’:
gaussian.c:118:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized]
  118 |       for (int j=0; j<p; j++) if (fabs(z[j]) > (cutoff * alpha * m[j])) e2[j] = 1;
      |                                                 ~~~~~~~^~~~~~~
gaussian.c:76:10: note: ‘cutoff’ was declared here
   76 |   double cutoff, l1, l2;
      |          ^~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c glm.c -o glm.o
glm.c: In function ‘cdfit_glm’:
glm.c:152:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized]
  152 |       for (int j=0; j<p; j++) if (fabs(z[j]) > (cutoff * alpha * m[j])) e2[j] = 1;
      |                                                 ~~~~~~~^~~~~~~
glm.c:91:42: note: ‘cutoff’ was declared here
   91 |   double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
      |                                          ^~~~~~
glm.c:200:24: warning: ‘si’ may be used uninitialized [-Wmaybe-uninitialized]
  200 |           max_change = fabs(si)*xwx/n;
      |                        ^~~~~~~~
glm.c:91:65: note: ‘si’ was declared here
   91 |   double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
      |                                                                 ^~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c maxprod.c -o maxprod.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mfdr_binomial.c -o mfdr_binomial.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mfdr_cox.c -o mfdr_cox.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mfdr_gaussian.c -o mfdr_gaussian.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ncvreg_init.c -o ncvreg_init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rawfit_gaussian.c -o rawfit_gaussian.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c standardize.c -o standardize.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ncvreg.so cox-dh.o gaussian.o glm.o maxprod.o mfdr_binomial.o mfdr_cox.o mfdr_gaussian.o ncvreg_init.o rawfit_gaussian.o standardize.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeJHMlq/R.INSTALL1aebed36f86886/ncvreg/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeJHMlq/R.INSTALL1aebed36f86886/ncvreg/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeJHMlq/R.INSTALL1aebed36f86886/ncvreg/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ncvreg/00new/ncvreg/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘ncvreg’
    finding HTML links ... done
    AUC                                     html  
    Heart                                   html  
    Lung                                    html  
    Prostate                                html  
    cv.ncvreg                               html  
    local_mfdr                              html  
    logLik.ncvreg                           html  
    mfdr                                    html  
    ncvfit                                  html  
    ncvreg-package                          html  
    ncvreg                                  html  
    ncvsurv                                 html  
    perm.ncvreg                             html  
    permres                                 html  
    plot.cv.ncvreg                          html  
    plot.mfdr                               html  
    plot.ncvreg                             html  
    plot.ncvsurv.func                       html  
    predict.ncvreg                          html  
    predict.ncvsurv                         html  
    residuals.ncvreg                        html  
    std                                     html  
    summary.cv.ncvreg                       html  
    summary.ncvreg                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ncvreg)