* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘ncvreg’ ... ** package ‘ncvreg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeJHMlq/R.INSTALL1aebed36f86886/ncvreg/src' gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cox-dh.c -o cox-dh.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gaussian.c -o gaussian.o gaussian.c: In function ‘cdfit_gaussian’: gaussian.c:118:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized] 118 | for (int j=0; j<p; j++) if (fabs(z[j]) > (cutoff * alpha * m[j])) e2[j] = 1; | ~~~~~~~^~~~~~~ gaussian.c:76:10: note: ‘cutoff’ was declared here 76 | double cutoff, l1, l2; | ^~~~~~ gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm.c -o glm.o glm.c: In function ‘cdfit_glm’: glm.c:152:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized] 152 | for (int j=0; j<p; j++) if (fabs(z[j]) > (cutoff * alpha * m[j])) e2[j] = 1; | ~~~~~~~^~~~~~~ glm.c:91:42: note: ‘cutoff’ was declared here 91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si; | ^~~~~~ glm.c:200:24: warning: ‘si’ may be used uninitialized [-Wmaybe-uninitialized] 200 | max_change = fabs(si)*xwx/n; | ^~~~~~~~ glm.c:91:65: note: ‘si’ was declared here 91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si; | ^~ gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c maxprod.c -o maxprod.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mfdr_binomial.c -o mfdr_binomial.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mfdr_cox.c -o mfdr_cox.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mfdr_gaussian.c -o mfdr_gaussian.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ncvreg_init.c -o ncvreg_init.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rawfit_gaussian.c -o rawfit_gaussian.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c standardize.c -o standardize.o gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ncvreg.so cox-dh.o gaussian.o glm.o maxprod.o mfdr_binomial.o mfdr_cox.o mfdr_gaussian.o ncvreg_init.o rawfit_gaussian.o standardize.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeJHMlq/R.INSTALL1aebed36f86886/ncvreg/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeJHMlq/R.INSTALL1aebed36f86886/ncvreg/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeJHMlq/R.INSTALL1aebed36f86886/ncvreg/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ncvreg/00new/ncvreg/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘ncvreg’ finding HTML links ... done AUC html Heart html Lung html Prostate html cv.ncvreg html local_mfdr html logLik.ncvreg html mfdr html ncvfit html ncvreg-package html ncvreg html ncvsurv html perm.ncvreg html permres html plot.cv.ncvreg html plot.mfdr html plot.ncvreg html plot.ncvsurv.func html predict.ncvreg html predict.ncvsurv html residuals.ncvreg html std html summary.cv.ncvreg html summary.ncvreg html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ncvreg)