* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘nat.templatebrains’ ...
** this is package ‘nat.templatebrains’ version ‘1.1’
** package ‘nat.templatebrains’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘nat.templatebrains’
    finding HTML links ... done
    FCWB.demo                               html  
    add_reg_folders                         html  
    add_reglist                             html  
    allreg_dataframe                        html  
    as.templatebrain                        html  
    bridging_sequence                       html  
    display_slice                           html  
    download_reg_repo                       html  
    fit_xform                               html  
Rd warning: fit_xform.Rd:18: missing link ‘xform’
Rd warning: fit_xform.Rd:23: missing link ‘xyzmatrix’
Rd warning: fit_xform.Rd:29: missing link ‘computeTransform’
Rd warning: fit_xform.Rd:41: missing link ‘computeTransform’
    fit_xform_brain                         html  
Rd warning: fit_xform_brain.Rd:29: missing link ‘computeTransform’
    guess_templatebrain                     html  
Rd warning: guess_templatebrain.Rd:24: missing link ‘im3d’
    local_reg_dir_for_url                   html  
Rd warning: local_reg_dir_for_url.Rd:32: missing link ‘user_data_dir’
Rd warning: local_reg_dir_for_url.Rd:40: missing link ‘user_data_dir’
    mirror_brain                            html  
    nat.templatebrains-package              html  
    plot3d.templatebrain                    html  
    regtemplate                             html  
    shortest_bridging_seq                   html  
    templatebrain-meths                     html  
    templatebrain                           html  
    update_reg_repos                        html  
    xform_brain                             html  
Rd warning: xform_brain.Rd:44: missing link ‘cmtk.reformatx’
Rd warning: xform_brain.Rd:140: missing link ‘xform’
Rd warning: xform_brain.Rd:140: missing link ‘xformpoints’
Rd warning: xform_brain.Rd:140: missing link ‘xformimage’
Rd warning: xform_brain.Rd:141: missing link ‘cmtk.reformatx’
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nat.templatebrains)