* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘nat.nblast’ ...
** this is package ‘nat.nblast’ version ‘1.6.7’
** package ‘nat.nblast’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘nat.nblast’
    finding HTML links ... done
    NeuriteBlast                            html  
    WeightedNNBasedLinesetMatching          html  
Rd warning: WeightedNNBasedLinesetMatching.Rd:22: missing link ‘dotprops’
Rd warning: WeightedNNBasedLinesetMatching.Rd:22: missing link ‘neuron’
Rd warning: WeightedNNBasedLinesetMatching.Rd:50: missing link ‘dotprops’
    calc_dists_dotprods                     html  
    calc_prob_mat                           html  
    calc_score_matrix                       html  
    create_scoringmatrix                    html  
    diagonal                                html  
    extract-methods                         html  
    fctraces20                              html  
    fill_in_sparse_score_mat                html  
    fill_pairs_sparse_score_mat             html  
    nat.nblast-package                      html  
Rd warning: nat.nblast-package.Rd:33: missing link ‘neuronlist’
Rd warning: nat.nblast-package.Rd:34: missing link ‘neuronlist’
Rd warning: nat.nblast-package.Rd:35: missing link ‘neuronlist’
Rd warning: nat.nblast-package.Rd:36: missing link ‘neuronlistfh’
    nblast                                  html  
Rd warning: nblast.Rd:24: missing link ‘nat-package’
Rd warning: nblast.Rd:75: missing link ‘plyr’
Rd warning: nblast.Rd:190: missing link ‘nat-package’
    nblast_allbyall                         html  
Rd warning: nblast_allbyall.Rd:41: missing link ‘neuronlist’
Rd warning: nblast_allbyall.Rd:22: missing link ‘neuronlist’
Rd warning: nblast_allbyall.Rd:29: missing link ‘neuronlist’
    neuron_pairs                            html  
Rd warning: neuron_pairs.Rd:10: missing link ‘neuronlist’
    nhclust                                 html  
    plot3d.hclust                           html  
Rd warning: plot3d.hclust.Rd:68: missing link ‘slice’
Rd warning: plot3d.hclust.Rd:69: missing link ‘colour_clusters’
    show_similarity                         html  
    smat.fcwb                               html  
    sparse_score_mat                        html  
    sub_dist_mat                            html  
    sub_score_mat                           html  
    subset.hclust                           html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nat.nblast)