* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘nLTT’ ...
** package ‘nLTT’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘nLTT’
    finding HTML links ... done
    abc_smc_nltt                            html  
    check_input_event_times                 html  
    check_phylogenies                       html  
    check_step_type                         html  
    check_time_unit                         html  
    default_params_doc                      html  
    exampleTrees                            html  
    get_average_nltt_matrix                 html  
    get_branching_times                     html  
    get_n_lineages                          html  
    get_nltt_values                         html  
    get_norm_brts                           html  
    get_norm_n                              html  
    get_phylogeny_nltt_matrix               html  
    mcmc_nltt                               html  
    nLTT-internal                           html  
    nLTT-package                            html  
    nLTTstat                                html  
    nLTTstat_exact                          html  
    nltt_diff                               html  
    nltt_diff_exact                         html  
    nltt_diff_exact_brts                    html  
    nltt_diff_exact_calc_extinct            html  
    nltt_diff_exact_extinct                 html  
    nltt_diff_exact_norm_brts               html  
    nltt_lines                              html  
    nltt_plot                               html  
    nltts_diff                              html  
    nltts_plot                              html  
    stretch_nltt_matrix                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path