* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘myTAI’ ...
** package ‘myTAI’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpbACnUs/R.INSTALL3e34da49735822/myTAI/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_MYTAI -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_MYTAI -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c code.cpp -o code.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_MYTAI -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c myTAI_init.c -o myTAI_init.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_MYTAI -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_funcs.cpp -o rcpp_funcs.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o myTAI.so RcppExports.o code.o myTAI_init.o rcpp_funcs.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpbACnUs/R.INSTALL3e34da49735822/myTAI/src'
make[1]: Entering directory '/tmp/RtmpbACnUs/R.INSTALL3e34da49735822/myTAI/src'
make[1]: Leaving directory '/tmp/RtmpbACnUs/R.INSTALL3e34da49735822/myTAI/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-myTAI/00new/myTAI/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘myTAI’
finding HTML links ... done
CollapseReplicates html
CombinatorialSignificance html
DiffGenes html
DivergenceExpressionSetExample html
EarlyConservationTest html
EnrichmentTest html
Expressed html
FlatLineTest html
GroupDiffs html
MatchMap html
PhyloExpressionSetExample html
PlotBarRE html
PlotCIRatio html
PlotCategoryExpr html
PlotContribution html
PlotCorrelation html
PlotDistribution html
PlotEnrichment html
PlotGeneSet html
PlotGroupDiffs html
PlotMeans html
PlotMedians html
PlotPattern html
PlotRE html
PlotReplicateQuality html
PlotSelectedAgeDistr html
PlotSignature html
PlotVars html
RE html
REMatrix html
ReductiveHourglassTest html
ReverseHourglassTest html
SelectGeneSet html
TAI html
TDI html
TPI html
age.apply html
bar.colors html
bootMatrix html
ecScore html
geom.mean html
harm.mean html
is.ExpressionSet html
omitMatrix html
pMatrix html
pStrata html
pTAI html
pTDI html
reversehourglassScore html
rhScore html
taxid html
taxonomy html
tf html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (myTAI)