* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mutSignatures’ ...
** this is package ‘mutSignatures’ version ‘2.1.1’
** package ‘mutSignatures’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘mutSignatures’
    finding HTML links ... done
    addWeak                                 html  
    alexaNMF                                html  
    as.data.frame-mutSignExposures-method   html  
    as.data.frame-mutationCounts-method     html  
    as.data.frame-mutationSignatures-method
                                            html  
    as.list-mutFrameworkParams-method       html  
    as.list-mutationSignatures-method       html  
    as.matrix-mutationCounts-method         html  
    as.mutation.counts                      html  
    as.mutation.signatures                  html  
    as.mutsign.exposures                    html  
    attachContext                           html  
    attachMutType                           html  
    bootstrapCancerGenomes                  html  
    cbind2                                  html  
    chihJenNMF                              html  
    coerceObj-methods                       html  
    countMutTypes                           html  
    custom_cssls                            html  
    custom_fcnnls                           html  
    decipherMutationalProcesses             html  
    deconvoluteMutCounts                    html  
    evaluateStability                       html  
    extractSignatures                       html  
    extractXvarlinkData                     html  
    filterOutIterations                     html  
    filterSNV                               html  
    frequencize                             html  
    getCosmicSignatures                     html  
    getCounts                               html  
    getFwkParam                             html  
    getMutationTypes                        html  
    getSampleIdentifiers                    html  
    getSignatureIdentifiers                 html  
    getTestRunArgs                          html  
    importVCFfiles                          html  
    leadZeros                               html  
    matchSignatures                         html  
    msigPlot                                html  
    mutFrameworkParams-class                html  
    mutFrameworkParams-show                 html  
    mutSigData                              html  
    mutSignExposures-class                  html  
    mutSignExposures-show                   html  
    mutSignatures-package                   html  
    mutationCounts-class                    html  
    mutationCounts-show                     html  
    mutationSignatures-class                html  
    mutationSignatures-show                 html  
    plotMutTypeProfile                      html  
    plotSignExposures                       html  
    prelimProcessAssess                     html  
    processVCFdata                          html  
    removeMismatchMut                       html  
    removeWeak                              html  
    resolveMutSignatures                    html  
    revCompl                                html  
    setFwkParam                             html  
    setMutClusterParams                     html  
    silhouetteMLB                           html  
    simplifySignatures                      html  
    sortByMutations                         html  
    sub-mutSignExposures-numeric-ANY-ANY-method
                                            html  
    sub-mutationCounts-numeric-ANY-ANY-method
                                            html  
    sub-mutationSignatures-numeric-ANY-ANY-method
                                            html  
    table2df                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mutSignatures)