* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘msm’ ...
** package ‘msm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp9qqrjN/R.INSTALL2c1b5d635fb6e7/msm/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c analyticp.c -o analyticp.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hmm.c -o hmm.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hmmderiv.c -o hmmderiv.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lik.c -o lik.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msm-init.c -o msm-init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pijt.c -o pijt.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o msm.so analyticp.o hmm.o hmmderiv.o lik.o msm-init.o pijt.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp9qqrjN/R.INSTALL2c1b5d635fb6e7/msm/src'
make[1]: Entering directory '/tmp/Rtmp9qqrjN/R.INSTALL2c1b5d635fb6e7/msm/src'
make[1]: Leaving directory '/tmp/Rtmp9qqrjN/R.INSTALL2c1b5d635fb6e7/msm/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-msm/00new/msm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘msm’
finding HTML links ... done
MatrixExp html
aneur html
boot.msm html
bos html
cav html
cmodel.object html
coef.msm html
crudeinits.msm html
deltamethod html
draic.msm html
ecmodel.object html
efpt.msm html
ematrix.msm html
emodel.object html
fev html
hazard.msm html
hmm-dists html
hmmMV html
hmodel.object html
logLik.msm html
lrtest.msm html
medists html
model.frame.msm html
msm-package html
msm html
msm.form.qoutput html
msm.object html
msm2Surv html
odds.msm html
paramdata.object html
pearson.msm html
pexp html
phasemeans.msm html
plot.msm html
plot.prevalence.msm html
plot.survfit.msm html
plotprog.msm html
pmatrix.msm html
pmatrix.piecewise.msm html
pnext.msm html
ppass.msm html
prevalence.msm html
print.msm html
printold.msm html
psor html
qcmodel.object html
qgeneric html
qmatrix.msm html
qmodel.object html
qratio.msm html
recreate.olddata html
scoreresid.msm html
sim.msm html
simfitted.msm html
simmulti.msm html
sojourn.msm html
statetable.msm html
summary.msm html
surface.msm html
tnorm html
totlos.msm html
transient.msm html
twophase html
updatepars.msm html
viterbi.msm html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (msm)