* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mrgsolve’ ...
** package ‘mrgsolve’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpEH3iZx/R.INSTALL235ff0e06dcdc/mrgsolve/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c LSODA.cpp -o LSODA.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dataobject.cpp -o dataobject.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c datarecord.cpp -o datarecord.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c devtran.cpp -o devtran.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c housemodel-mread-source.cpp -o housemodel-mread-source.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mrgsolve.cpp -o mrgsolve.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/mpl/arg.hpp:25,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/iterator/iterator_adaptor.hpp:14,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/token_iterator.hpp:22,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/tokenizer.hpp:20,
                 from mrgsolve.cpp:29:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
      |     -
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
      |     -
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mrgsolve_init.cpp -o mrgsolve_init.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c odeproblem.cpp -o odeproblem.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mrgsolve.so LSODA.o RcppExports.o dataobject.o datarecord.o devtran.o housemodel-mread-source.o mrgsolve.o mrgsolve_init.o odeproblem.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpEH3iZx/R.INSTALL235ff0e06dcdc/mrgsolve/src'
make[1]: Entering directory '/tmp/RtmpEH3iZx/R.INSTALL235ff0e06dcdc/mrgsolve/src'
make[1]: Leaving directory '/tmp/RtmpEH3iZx/R.INSTALL235ff0e06dcdc/mrgsolve/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mrgsolve/00new/mrgsolve/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘mrgsolve’
    finding HTML links ... done
    BLOCK_PARSE                             html  
    PKMODEL                                 html  
    Req                                     html  
    aboutsolver                             html  
    as.ev                                   html  
    as.list-mrgmod-method                   html  
    as.list-mrgsims-method                  html  
    as_data_set                             html  
    as_deslist                              html  
    blocks                                  html  
    cama                                    html  
    carry_out                               html  
    check_data_names                        html  
    cmt_list-class                          html  
    cmtn                                    html  
    code                                    html  
    collapse_matrices                       html  
    collapse_matrix                         html  
    cvec                                    html  
    data_set                                html  
    design                                  html  
    details                                 html  
    env_eval                                html  
    env_get                                 html  
    env_ls                                  html  
    env_update                              html  
    ev-class                                html  
    ev                                      html  
    ev_assign                               html  
    ev_days                                 html  
    ev_dplyr                                html  
    ev_extract                              html  
    ev_methods                              html  
    ev_ops                                  html  
    ev_rep                                  html  
    ev_repeat                               html  
    ev_rx                                   html  
    ev_seq                                  html  
    evd                                     html  
    exdatasets                              html  
    expand.idata                            html  
    expand_observations                     html  
    file_show                               html  
    house                                   html  
    idata_set                               html  
    init                                    html  
    inventory                               html  
    is.mrgmod                               html  
    is.mrgsims                              html  
    knobs                                   html  
    lctran                                  html  
    loadso                                  html  
    lower2matrix                            html  
    matlist-class                           html  
    matlist                                 html  
    matlist_ops                             html  
    matrix_converters                       html  
    matrix_helpers                          html  
    mcRNG                                   html  
    mcode                                   html  
    merge                                   html  
    mod                                     html  
    modMATRIX                               html  
    modelparse                              html  
    modlib                                  html  
    modlib_details                          html  
    modlib_pk                               html  
    modlib_pkpd                             html  
    modlib_tmdd                             html  
    modlib_viral                            html  
    mread                                   html  
    mrgmod-class                            html  
    mrgmod_extract                          html  
    mrgsim                                  html  
    mrgsim_q                                html  
    mrgsim_variants                         html  
    mrgsims-class                           html  
    mrgsims                                 html  
    mrgsims_dplyr                           html  
    mrgsims_modify                          html  
    mrgsolve_package                        html  
    mvgauss                                 html  
    names-mrgmod-method                     html  
    nmext                                   html  
    nmxml                                   html  
    numeric2diag                            html  
    numericlist-class                       html  
    numericlist                             html  
    numerics_only                           html  
    obsaug                                  html  
    obsonly                                 html  
    omega                                   html  
    outvars                                 html  
    param                                   html  
    param_tags                              html  
    parameter_list-class                    html  
    plot_batch_mrgsims                      html  
    plot_mrgsims                            html  
    plot_sims                               html  
    qsim                                    html  
    read_nmext                              html  
    realize_addl                            html  
    reexports                               html  
    render                                  html  
    reserved                                html  
    revar                                   html  
    scrape_and_call                         html  
    scrape_opts                             html  
    see                                     html  
    show-cmt_list-method                    html  
    show-mrgmod-method                      html  
    show-parameter_list-method              html  
    sigma                                   html  
    simargs                                 html  
    soloc                                   html  
    solversettings                          html  
    stime                                   html  
    summary.mrgmod                          html  
    tgrid                                   html  
    tgrid_ops                               html  
    touch_funs                              html  
    tscale                                  html  
    update                                  html  
    valid_data_set                          html  
    valid_idata_set                         html  
    wf_sweep                                html  
    within                                  html  
    zchain                                  html  
    zero_re                                 html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mrgsolve)