- using R version 4.5.2 Patched (2025-11-09 r88993)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.3.0-10) 14.3.0
GNU Fortran (Debian 14.3.0-10) 14.3.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘movedesign/DESCRIPTION’ ... OK
- this is package ‘movedesign’ version ‘0.3.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘movedesign’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [20s/28s] OK
- checking whether the package can be loaded with stated dependencies ... [20s/26s] OK
- checking whether the package can be unloaded cleanly ... [19s/25s] OK
- checking whether the namespace can be loaded with stated dependencies ... [19s/26s] OK
- checking whether the namespace can be unloaded cleanly ... [20s/25s] OK
- checking loading without being on the library search path ... [11s/15s] OK
- checking whether startup messages can be suppressed ... [20s/26s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [143s/182s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [12s/17s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [14s/17s] OK
Running ‘testthat.R’ [13s/17s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [22s/56s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘issues.qmd’ using html
[31m
processing file: issues.qmd
[39m [31moutput file: issues.knit.md
[39m [1mpandoc [22m
to: html
output-file: issues.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
[1mmetadata [22m
document-css: false
lang: en
minimal: true
theme: none
title: Issues
author: Inês Silva
date: '`r Sys.Date()`'
description: |
Common installation issues
vignette: |
%\VignetteIndexEntry{Installation issues} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
knitr:
opts_chunk:
collapse: true
comment: '#>'
Output created: issues.html
--- finished re-building ‘issues.qmd’
--- re-building ‘movedesign.qmd’ using html
[31m
processing file: movedesign.qmd
[39m [31moutput file: movedesign.knit.md
[39m [1mpandoc [22m
to: html
output-file: movedesign.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
[1mmetadata [22m
document-css: false
lang: en
minimal: true
theme: none
title: movedesign
author: Inês Silva
date: '`r Sys.Date()`'
vignette: |
%\VignetteIndexEntry{Introduction to movedesign} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
knitr:
opts_chunk:
collapse: true
comment: '#>'
bibliography:
- references.bib
csl: style.csl
Output created: movedesign.html
--- finished re-building ‘movedesign.qmd’
--- re-building ‘tutorial_ind.qmd’ using html
[31m
processing file: tutorial_ind.qmd
[39m [31moutput file: tutorial_ind.knit.md
[39m [1mpandoc [22m
to: html
output-file: tutorial_ind.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
[1mmetadata [22m
document-css: false
lang: en
minimal: true
theme: none
title: Walkthrough (single estimate)
author: Inês Silva
date: '`r Sys.Date()`'
description: |
How to design an animal tracking project with 'movedesign'
vignette: |
%\VignetteIndexEntry{Tutorial for individual estimates} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
knitr:
opts_chunk:
collapse: true
comment: '#>'
bibliography:
- references.bib
csl: style.csl
Could not fetch http://www.zotero.org/styles/apa
HttpExceptionRequest Request {
host = "www.zotero.org"
port = 80
secure = False
requestHeaders = []
path = "/styles/apa"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
proxySecureMode = ProxySecureWithConnect
}
ConnectionTimeout
[33mWARN: Error encountered when rendering files [39m
Error: processing vignette 'tutorial_ind.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error:
! Could not parse cli `{}` expression: `Tutorial for indivi…`.
Caused by error:
! <text>:1:10: unexpected 'for'
1: Tutorial for
^
--- failed re-building ‘tutorial_ind.qmd’
--- re-building ‘tutorial_pop.qmd’ using html
[31m
processing file: tutorial_pop.qmd
[39m [31moutput file: tutorial_pop.knit.md
[39m [1mpandoc [22m
to: html
output-file: tutorial_pop.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
[1mmetadata [22m
document-css: false
lang: en
minimal: true
theme: none
title: Walkthrough (population-level)
author: Inês Silva
date: '`r Sys.Date()`'
description: |
How to design an animal tracking project with 'movedesign' (for population-level inferences)
vignette: |
%\VignetteIndexEntry{Tutorial for population-level estimates} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}
knitr:
opts_chunk:
collapse: true
comment: '#>'
bibliography:
- references.bib
csl: style.csl
Output created: tutorial_pop.html
--- finished re-building ‘tutorial_pop.qmd’
SUMMARY: processing the following file failed:
‘tutorial_ind.qmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [7s/10s] OK
- checking HTML version of manual ... [2s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR