* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mnirs’ ...
** this is package ‘mnirs’ version ‘0.8.0’
** package ‘mnirs’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘mnirs’
    finding HTML links ... done
    SSbiexponential                         html  
    SSexponential_drift                     html  
    SSgompertz                              html  
    SSlogistic                              html  
    SSmonoexponential                       html  
    SSsigmoidal_drift                       html  
    abort_validation                        html  
    accept_port_fit                         html  
    analyse_biexponential                   html  
    analyse_exponential_drift               html  
    analyse_kinetics                        html  
    analyse_kinetics_channels               html  
    analyse_kinetics_intervals              html  
    analyse_logistic                        html  
    analyse_monoexponential                 html  
    analyse_peak_slope                      html  
    analyse_response_time                   html  
    analyse_sigmoidal_drift                 html  
    apply_interval_groups                   html  
    apply_span                              html  
    artinis_intervals.xlsx                  html  
    as_data_list                            html  
    as_mnirs_interval                       html  
    as_plot_data                            html  
    biexp_core                              html  
    biexp_init                              html  
    biexp_start                             html  
    biexponential                           html  
    breaks_timespan                         html  
    build_fit_results                       html  
    build_kinetics_results                  html  
    build_na_results                        html  
    build_ss_formula                        html  
    by_time                                 html  
    clean_channel_names                     html  
    clean_cnd_message                       html  
    compute_diagnostics                     html  
    compute_helpers                         html  
    convert_type                            html  
    correct_blood_volume                    html  
    count_decimals                          html  
    count_sigfigs                           html  
    create_mnirs_data                       html  
    detect_direction                        html  
    detect_dttm_format                      html  
    detect_irregular_samples                html  
    detect_mnirs_device                     html  
    detect_time_channel                     html  
    device_patterns                         html  
    dttm_opts                               html  
    embed_fit_call                          html  
    enforce_direction                       html  
    ensemble_intervals                      html  
    example_mnirs                           html  
    expdrift_init                           html  
    expdrift_model                          html  
    expdrift_onset                          html  
    expdrift_start                          html  
    exponential_drift                       html  
    extract_df_list                         html  
    extract_intervals                       html  
    extract_start_timestamp                 html  
    filter_butterworth                      html  
    filter_mnirs                            html  
    filter_moving_average                   html  
    find_header_row                         html  
    find_interval_time                      html  
    find_kinetics_idx                       html  
    fit_biexponential                       html  
    fit_control                             html  
    fit_exponential_drift                   html  
    fit_monoexponential                     html  
    fit_names                               html  
    fit_sigmoidal                           html  
    fit_sigmoidal_drift                     html  
    fit_td_fallback                         html  
    format_hmmss                            html  
    free_params                             html  
    full_coefs                              html  
    gompertz                                html  
    gompertz_init                           html  
    hms_to_seconds                          html  
    init_asymptotes                         html  
    init_fixed                              html  
    init_inflection                         html  
    is_arg_map                              html  
    is_empty                                html  
    kinetics_annotations                    html  
    kinetics_warnings_df                    html  
    logistic                                html  
    logistic_init                           html  
    map_mnirs_intervals                     html  
    mnirs-package                           html  
    mnirs_metadata                          html  
    monoexp_init                            html  
    monoexp_model                           html  
    monoexp_start                           html  
    monoexponential                         html  
    moxy_intervals.csv                      html  
    moxy_ramp.xlsx                          html  
    name_channels                           html  
    normalise_interval_groups               html  
    oxysoft_sample_rate                     html  
    palette_mnirs                           html  
    parse_channel_name                      html  
    parse_dttm                              html  
    parse_oxysoft_legend                    html  
    parse_time_channel                      html  
    peak_slope                              html  
    pionirs_occlusion.ftn                   html  
    plot.mnirs                              html  
    plot.mnirs_kinetics                     html  
    portamon_oxcap.xlsx                     html  
    preserve_metadata                       html  
    preserve_na                             html  
    print.mnirs                             html  
    print.mnirs_kinetics                    html  
    read_file                               html  
    read_mnirs                              html  
    recycle_param                           html  
    recycle_span                            html  
    recycle_to_length                       html  
    remove_empty_rows_cols                  html  
    rename_duplicates                       html  
    replace_mnirs                           html  
    resample_mnirs                          html  
    rescale_mnirs                           html  
    resolve_channel_args                    html  
    resolve_channels                        html  
    resolve_fixed_params                    html  
    resolve_interval                        html  
    resolve_interval_args                   html  
    response_time                           html  
    rolling_slope                           html  
    scale_colour_mnirs                      html  
    select_channels                         html  
    seq_range                               html  
    setup_kinetics_worker                   html  
    shift_mnirs                             html  
    sigdrift_init                           html  
    sigdrift_model                          html  
    sigdrift_onset                          html  
    sigdrift_rate                           html  
    sigdrift_start                          html  
    sigdrift_texc                           html  
    sigmoid_core                            html  
    sigmoidal_drift                         html  
    signif_trailing                         html  
    solve_grid3                             html  
    split_kinetics_groups                   html  
    theme_mnirs                             html  
    train.red_intervals.csv                 html  
    validate_findInt                        html  
    validate_fix                            html  
    validate_group_channels                 html  
    validate_interval_channels              html  
    validate_kinetics_args                  html  
    validate_mnirs                          html  
    validate_start_time                     html  
    warn_call                               html  
    warn_fit_failed                         html  
    warn_map_keys                           html  
    within                                  html  
    wrap                                    html  
    zero_offset_data                        html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mnirs)