* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mmand’ ...
** package ‘mmand’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++-13 -std=gnu++17 accepts -g... yes
checking for OpenMP flag of C++ compiler... -fopenmp
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmptQUCu1/R.INSTALL203be42a2a31e1/mmand/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Array.cpp -o Array.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Componenter.cpp -o Componenter.o
In file included from Componenter.cpp:6:
lemon/connectivity.h: In function ‘bool lemon::stronglyConnected(const Digraph&)’:
lemon/connectivity.h:268:36: warning: typedef ‘Node’ locally defined but not used [-Wunused-local-typedefs]
268 | typedef typename Digraph::Node Node;
| ^~~~
lemon/connectivity.h: In function ‘int lemon::countStronglyConnectedComponents(const Digraph&)’:
lemon/connectivity.h:336:35: warning: typedef ‘Arc’ locally defined but not used [-Wunused-local-typedefs]
336 | typedef typename Digraph::Arc Arc;
| ^~~
lemon/connectivity.h:338:37: warning: typedef ‘ArcIt’ locally defined but not used [-Wunused-local-typedefs]
338 | typedef typename Digraph::ArcIt ArcIt;
| ^~~~~
lemon/connectivity.h: In function ‘void lemon::topologicalSort(const Digraph&, NodeMap&)’:
lemon/connectivity.h:1346:36: warning: typedef ‘Node’ locally defined but not used [-Wunused-local-typedefs]
1346 | typedef typename Digraph::Node Node;
| ^~~~
lemon/connectivity.h:1348:35: warning: typedef ‘Arc’ locally defined but not used [-Wunused-local-typedefs]
1348 | typedef typename Digraph::Arc Arc;
| ^~~
lemon/connectivity.h: In function ‘bool lemon::bipartite(const Graph&)’:
lemon/connectivity.h:1561:35: warning: typedef ‘ArcIt’ locally defined but not used [-Wunused-local-typedefs]
1561 | typedef typename Graph::ArcIt ArcIt;
| ^~~~~
lemon/connectivity.h: In function ‘bool lemon::bipartitePartitions(const Graph&, NodeMap&)’:
lemon/connectivity.h:1606:34: warning: typedef ‘Node’ locally defined but not used [-Wunused-local-typedefs]
1606 | typedef typename Graph::Node Node;
| ^~~~
lemon/connectivity.h:1608:35: warning: typedef ‘ArcIt’ locally defined but not used [-Wunused-local-typedefs]
1608 | typedef typename Graph::ArcIt ArcIt;
| ^~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Distancer.cpp -o Distancer.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Kernel.cpp -o Kernel.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Morpher.cpp -o Morpher.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Resampler.cpp -o Resampler.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c main.cpp -o main.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mmand.so Array.o Componenter.o Distancer.o Kernel.o Morpher.o Resampler.o main.o -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmptQUCu1/R.INSTALL203be42a2a31e1/mmand/src'
make[1]: Entering directory '/tmp/RtmptQUCu1/R.INSTALL203be42a2a31e1/mmand/src'
make[1]: Leaving directory '/tmp/RtmptQUCu1/R.INSTALL203be42a2a31e1/mmand/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mmand/00new/mmand/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘mmand’
finding HTML links ... done
binarise html
binary html
components html
display html
distanceTransform html
filters html
gameOfLife html
gaussianSmooth html
kernels html
morph html
morphology html
neighbourhood html
resample html
sampleKernelFunction html
skeletonise html
sketch html
symmetric html
threshold html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mmand)