* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mizer’ ...
** this is package ‘mizer’ version ‘3.0.0’
** package ‘mizer’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.3.0-1) 15.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpklKstL/R.INSTALL3be02045de5fb4/mizer/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inner_project_loop.cpp -o inner_project_loop.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c project_n_loop.cpp -o project_n_loop.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mizer.so RcppExports.o inner_project_loop.o project_n_loop.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpklKstL/R.INSTALL3be02045de5fb4/mizer/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpklKstL/R.INSTALL3be02045de5fb4/mizer/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpklKstL/R.INSTALL3be02045de5fb4/mizer/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mizer/00new/mizer/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘mizer’
finding HTML links ... done
ArraySpeciesBySize html
ArrayTimeBySpecies html
ArrayTimeBySpeciesBySize html
BevertonHoltRDD html
MizerParams-class html
MizerParams html
MizerSim-class html
MizerSim html
N html
NOther html
NS_interaction html
NS_params html
NS_sim html
NS_species_params html
NS_species_params_gears html
RickerRDD html
SheperdRDD html
addPlot html
addSpecies html
age_mat html
age_mat_vB html
animate html
as.data.frame html
assertExtensionChain html
baseMizerClass html
box_pred_kernel html
calc_selectivity html
calibrateBiomass html
calibrateNumber html
calibrateYield html
cdf_y_label html
clearExtensionChain html
coerceToExtensionClass html
compareExtensionChains html
compareParams html
completeSpeciesParams html
constantEggRDI html
constantRDD html
constant_other html
convert_plot_size_axis html
customFunction html
default_pred_kernel_params html
defaults_edition html
defineExtensionClasses html
defineOrCheckClass html
different html
dispatchExtensions html
distanceMaxRelRDI html
distanceSSLogN html
dot-checkRateFunctionOutput html
double_sigmoid_length html
emptyParams html
ensureExtensionNamespaces html
expandSizeGrid html
filter_plot_length_limits html
finalN html
finalParams html
flux_from_rates html
flux_units html
formatExtensionChain html
gear_params html
getBiomass html
getCommunitySlope html
getCriticalFeedingLevel html
getDiet html
getDiffusion html
getEGrowth html
getERepro html
getEReproAndGrowth html
getESpawning html
getEffort html
getEncounter html
getFMort html
getFMortGear html
getFeedingLevel html
getFlux html
getGrowthCurves html
getInteraction html
getM2 html
getM2Background html
getMeanMaxWeight html
getMeanWeight html
getMort html
getN html
getParams html
getPhiPrey html
getPredMort html
getPredRate html
getProportionOfLargeFish html
getRDD html
getRDI html
getRates html
getRegisteredExtensions html
getReproductionLevel html
getRequiredRDD html
getResourceDynamics html
getResourceMort html
getSSB html
getSimParams html
getTimes html
getTrophicLevel html
getTrophicLevelBySpecies html
getYield html
getYieldGear html
getZ html
get_ArraySpeciesBySize_w html
get_f0_default html
get_gamma_default html
get_h_default html
get_initial_n html
get_ks_default html
get_phi html
get_sim_rate_slice html
get_sim_rate_time_elements html
get_size_range_array html
get_species_size_rate_from_sim html
get_species_time_rate_from_sim html
get_steady_state_n html
get_time_elements html
indicator_functions html
initialN-set html
initialNOther-set html
initialNResource-set html
initialParams html
initial_effort html
inter html
is.ArraySpeciesBySize html
is.ArrayTimeBySpecies html
is.ArrayTimeBySpeciesBySize html
isSuffixChain html
isVersionRequirement html
knife_edge html
l2w html
log_breaks html
lognormal_pred_kernel html
make_linesize html
make_mizer_plot html
markBackground html
matchBiomasses html
matchGrowth html
matchNumbers html
matchYields html
mizer-package html
mizerDiffusion html
mizerEGrowth html
mizerERepro html
mizerEReproAndGrowth html
mizerEncounter html
mizerFMort html
mizerFMortGear html
mizerFeedingLevel html
mizerMort html
mizerPredMort html
mizerPredRate html
mizerRDI html
mizerRates html
mizerResourceMort html
mizer_rates_subset html
mizer_tooltip_vars html
needed_rates html
needs_upgrading html
newCommunityParams html
newMultispeciesParams html
newSingleSpeciesParams html
newTraitParams html
noRDD html
objectExtensions html
parseTimePlotLog html
plot html
plot2 html
plotBiomass html
plotBiomassObservedVsModel html
plotCDF html
plotCDF2 html
plotComparisonDataFrame html
plotDataFrame html
plotDiet html
plotFMort html
plotFeedingLevel html
plotGrowthCurves html
plotHover html
plotM2 html
plotMizerParams html
plotMizerSim html
plotPredMort html
plotRelative html
plotRelativeDataFrame html
plotSpectra html
plotSpectra2 html
plotSpectraRelative html
plotYield html
plotYieldGear html
plotYieldObservedVsModel html
plot_cdf html
plot_diet html
plot_feeding_level html
plot_growth_curves html
plot_size_axis html
plot_size_tooltip html
plot_size_x_var html
plot_size_xlab html
plot_size_xlim html
plot_spectra html
plotting_functions html
power_law_pred_kernel html
prepare_spectra_cdf_data html
print html
project html
projectRDD html
projectToSteady html
project_n html
project_n_2 html
project_simple html
reexports html
registerExtension html
registerExtensions html
relative_difference html
removeBackgroundSpecies html
removeSpecies html
renameGear html
renameSpecies html
resource_constant html
resource_logistic html
resource_params html
resource_semichemostat html
saveParams html
scaleModel html
scaleRates html
setBevertonHolt html
setColours html
setComponent html
setExtDiffusion html
setExtEncounter html
setExtMort html
setFishing html
setInitialValues html
setInteraction html
setMaxIntakeRate html
setMetabolicRate html
setMetadata html
setParams html
setPredKernel html
setRateFunction html
setReproduction html
setResource html
setRmax html
setSearchVolume html
set_community_model html
set_multispecies_model html
set_species_param_default html
set_trait_model html
sigmoid_length html
sigmoid_weight html
simExtensionClass html
sim_size_rate html
sim_species_rate html
species_params html
spectra_bin_width html
spectra_y_label html
steady html
steadySingleSpecies html
str.MizerParams html
str.MizerSim html
str html
summary.MizerParams html
summary.MizerSim html
summary html
summary_functions html
truncated_lognormal_pred_kernel html
upgradeParams html
upgradeSim html
use_predation_diffusion html
usesExtensionDispatch html
validEffortVector html
validGearParams html
validParams html
validSim html
validSpeciesParams html
valid_gears_arg html
valid_species_arg html
validateExtensionsVector html
w html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mizer)