Check results for 'migraph'

using R version 4.6.1 RC (2026-06-18 r90186)
using platform: x86_64-pc-linux-gnu
R was compiled by gcc-15 (Debian 15.3.0-1) 15.3.0 GNU Fortran (Debian 15.3.0-1) 15.3.0
running under: Debian GNU/Linux forky/sid
using session charset: UTF-8 * current time: 2026-06-24 15:27:39 UTC
checking for file ‘migraph/DESCRIPTION’ ... OK
this is package ‘migraph’ version ‘1.6.2’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘migraph’ can be installed ... OK See the install log for details.
checking package directory ... OK
checking for future file timestamps ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [4s/6s] OK
checking whether the package can be loaded with stated dependencies ... [4s/6s] OK
checking whether the package can be unloaded cleanly ... [4s/6s] OK
checking whether the namespace can be loaded with stated dependencies ... [4s/6s] OK
checking whether the namespace can be unloaded cleanly ... [5s/5s] OK
checking loading without being on the library search path ... [4s/6s] OK
checking use of S3 registration ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [22s/31s] OK
checking Rd files ... [0s/1s] OK
checking Rd metadata ... OK
checking Rd line widths ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking R/sysdata.rda ... OK
checking examples ... [38s/49s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed predict 14.271 0.106 20.084 regression 8.063 0.086 10.452 make_play 4.932 0.107 5.188 tests 4.339 0.055 6.508
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [117s/64s] ERROR Running ‘testthat.R’ [117s/64s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(manynet) > library(migraph) Loading required package: autograph Loading required package: netrics > > test_check("migraph") Starting 2 test processes. > test-tutorials_manynet.R: Loading required namespace: shiny Saving _problems/test-model_distrib-10.R > test-tutorials_migraph.R: [1] "Hello World" > test-tutorials_netrics.R: [1] 0.48378 > test-tutorials_run.R: # A tibble: 0 x 0 > test-tutorials_run.R: # A tibble: 0 x 0 Saving _problems/test-tutorials_netrics-11.R [ FAIL 2 | WARN 0 | SKIP 3 | PASS 837 ] ══ Skipped tests (3) ═══════════════════════════════════════════════════════════ • On Linux (1): 'test-model_tests.R:58:3' • Skipping slow functions in diffusion.Rmd (1): 'test-tutorials_migraph.R:12:5' • empty test (1): 'test-measure_over.R:1:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-model_distrib.R:10:3'): test_fit works ───────────────────────── <vctrs_error_subscript_oob/vctrs_error_subscript/rlang_error/error/condition> Error in `dplyr::select(., sim, time, I)`: Can't select columns that don't exist. x Column `time` doesn't exist. Backtrace: ▆ 1. ├─migraph::test_fit(x, y) at test-model_distrib.R:10:3 2. │ └─y %>% dplyr::select(sim, time, I) 3. ├─dplyr::select(., sim, time, I) 4. ├─dplyr:::select.data.frame(., sim, time, I) 5. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call) 6. │ └─tidyselect:::eval_select_impl(...) 7. │ ├─tidyselect:::with_subscript_errors(...) 8. │ │ └─base::withCallingHandlers(...) 9. │ └─tidyselect:::vars_select_eval(...) 10. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 11. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 12. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 13. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 14. │ └─tidyselect:::as_indices_sel_impl(...) 15. │ └─tidyselect:::as_indices_impl(...) 16. │ └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg) 17. │ └─vctrs::vec_as_location(...) 18. └─vctrs (local) `<fn>`() at vctrs/R/subscript-loc.R:84:3 19. └─vctrs:::stop_subscript_oob(...) 20. └─vctrs:::stop_subscript(...) at vctrs/R/subscript-loc.R:503:3 21. └─rlang::abort(...) at vctrs/R/subscript.R:150:3 ── Failure ('test-tutorials_netrics.R:10:5'): netrics tutorial code runs without warnings or errors ── Expected `e` to be NULL. Differences: `actual` is an S3 object of class <packageNotFoundError/error/condition>, a list `expected` is NULL Error in expression 26 of position.Rmd: plot(node_in_structural(to_named(ison_algebra), k = "elbow")) Backtrace: ▆ 1. ├─testthat::expect_null(...) at test-tutorials_netrics.R:10:5 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─migraph:::check_tute_functions(tute) 5. └─testthat::expect_null(...) at ./helper-functions.R:120:5 [ FAIL 2 | WARN 0 | SKIP 3 | PASS 837 ] Error: ! Test failures. Execution halted
checking PDF version of manual ... [5s/8s] OK
checking HTML version of manual ... [2s/3s] OK
checking for non-standard things in the check directory ... OK
DONE

Status: 1 ERROR