* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘microPop’ ...
** this is package ‘microPop’ version ‘1.6’
** package ‘microPop’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘microPop’
    finding HTML links ... done
    Acetogens                               html  
    Bacteroides                             html  
    ButyrateProducers1                      html  
    ButyrateProducers2                      html  
    ButyrateProducers3                      html  
    LactateProducers                        html  
    MFG                                     html  
    Methanogens                             html  
    NoButyFibreDeg                          html  
    NoButyStarchDeg                         html  
    PropionateProducers                     html  
    Xaa                                     html  
    Xh2                                     html  
    Xsu                                     html  
    applyTraitTradeOffs                     html  
    assignNAsToMFGs                         html  
    assignStrainTraits                      html  
    checkResInfo                            html  
    checkSolution                           html  
    checkStoichiom                          html  
    combineGrowthLimFuncDefault             html  
    combinePathsFuncDefault                 html  
    convertFlowsToMoles                     html  
    convertStatesToMoles                    html  
    createDF                                html  
    derivsDefault                           html  
    entryRateFuncDefault                    html  
    extraGrowthLimFuncDefault               html  
    getAllResources                         html  
    getGroupName                            html  
    getKeyRes                               html  
    getNonBoostFrac                         html  
    getNumPaths                             html  
    getPHcorners                            html  
    getStrainPHcorners                      html  
    getStrainParamsFromFile                 html  
    getVNPlotObject                         html  
    getValues                               html  
    growthLimFuncDefault                    html  
    makeInflowFromSoln                      html  
    makeNetworkMatrices                     html  
    makeParamMatrixG                        html  
    makeParamMatrixS                        html  
    massBalanceFuncDefault                  html  
    meanTraitFunc                           html  
    microPop-package                        html  
    microPopModel                           html  
    microbeSysInfo                          html  
    microbeSysInfoHuman                     html  
    microbeSysInfoRumen                     html  
    networkDFfromMPinput                    html  
    networkDFfromMPoutput                   html  
    pHFuncDefault                           html  
    pHLimFuncDefault                        html  
    pHcentreOfMass                          html  
    plotMicrobes                            html  
    plotResources                           html  
    plotTraitChange                         html  
    productionFuncDefault                   html  
    quickPlot                               html  
    quickPlot1                              html  
    quickPlot2                              html  
    rateFuncsDefault                        html  
    removalRateFuncDefault                  html  
    replaceListItems                        html  
    reshapeFlowMat                          html  
    resourceSysInfo                         html  
    resourceSysInfoHuman                    html  
    resourceSysInfoRumen                    html  
    runMicroPopExample                      html  
    strainParams                            html  
    subsetFunc                              html  
    sumConcOverStrains                      html  
    sumFlowOverStrains                      html  
    sumFlowsOverPaths                       html  
    systemInfoMicrobesPhyto                 html  
    systemInfoMicrobesVirus                 html  
    systemInfoResourcesPhyto                html  
    systemInfoResourcesVirus                html  
    uptakeFuncDefault                       html  
    waterUptakeRatio                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (microPop)