* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘miRetrieve’ ...
** this is package ‘miRetrieve’ version ‘1.3.4’
** package ‘miRetrieve’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘miRetrieve’
    finding HTML links ... done
    add_col_topic                           html  
    animal_keywords                         html  
    assign_topic                            html  
    assign_topic_lda                        html  
    biomarker_keywords                      html  
    calculate_score_animals                 html  
    calculate_score_biomarker               html  
    calculate_score_patients                html  
    calculate_score_topic                   html  
    combine_df                              html  
    combine_mir                             html  
    combine_stopwords                       html  
    compare_mir_count                       html  
    compare_mir_count_log2                  html  
    compare_mir_count_unique                html  
    compare_mir_terms                       html  
    compare_mir_terms_log2                  html  
    compare_mir_terms_scatter               html  
    compare_mir_terms_unique                html  
    count_mir                               html  
    count_mir_threshold                     html  
    count_snp                               html  
    count_target                            html  
    df_crc                                  html  
    df_mirtarbase                           html  
    df_panc                                 html  
    df_test                                 html  
    extract_mir_df                          html  
    extract_mir_string                      html  
    extract_snp                             html  
    fit_lda                                 html  
    generate_stopwords                      html  
    get_distinct_mir_df                     html  
    get_distinct_mir_vec                    html  
    get_mir                                 html  
    get_pmid                                html  
    get_shared_mir_df                       html  
    get_shared_mir_vec                      html  
    get_snp                                 html  
    indicate_mir                            html  
    indicate_term                           html  
    join_mirtarbase                         html  
    join_targets                            html  
    ngram_stopwords                         html  
    patients_keywords                       html  
    plot_lda_term                           html  
    plot_mir_count                          html  
    plot_mir_count_threshold                html  
    plot_mir_development                    html  
    plot_mir_new                            html  
    plot_mir_terms                          html  
    plot_perplexity                         html  
    plot_score_animals                      html  
    plot_score_biomarker                    html  
    plot_score_patients                     html  
    plot_score_topic                        html  
    plot_target_count                       html  
    plot_target_mir_scatter                 html  
    plot_wordcloud                          html  
    read_pubmed                             html  
    read_pubmed_jats                        html  
    save_excel                              html  
    save_plot                               html  
    stopwords_2gram                         html  
    stopwords_miretrieve                    html  
    stopwords_pubmed                        html  
    subset_df                               html  
    subset_mir                              html  
    subset_mir_threshold                    html  
    subset_research                         html  
    subset_review                           html  
    subset_snp                              html  
    subset_year                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRetrieve)