* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mgcv’ ...
** package ‘mgcv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpGLDzKw/R.INSTALL7496042ff7046/mgcv/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxph.c -o coxph.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c davies.c -o davies.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c discrete.c -o discrete.o
discrete.c: In function ‘CXWyd’:
discrete.c:700:62: warning: unused variable ‘nrs’ [-Wunused-variable]
700 | int n,*k,*ks,*m,*p,*ts,*dt,*qc,*nthreads,*cs,*rs,nx,nt,ncs,nrs,*ar_stop,*ar_row,*cy;
| ^~~
discrete.c:700:49: warning: unused variable ‘rs’ [-Wunused-variable]
700 | int n,*k,*ks,*m,*p,*ts,*dt,*qc,*nthreads,*cs,*rs,nx,nt,ncs,nrs,*ar_stop,*ar_row,*cy;
| ^~
discrete.c:700:35: warning: unused variable ‘nthreads’ [-Wunused-variable]
700 | int n,*k,*ks,*m,*p,*ts,*dt,*qc,*nthreads,*cs,*rs,nx,nt,ncs,nrs,*ar_stop,*ar_row,*cy;
| ^~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gdi.c -o gdi.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c magic.c -o magic.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mat.c -o mat.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mgcv.c -o mgcv.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvn.c -o mvn.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ncv.c -o ncv.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qp.c -o qp.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c soap.c -o soap.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparse-smooth.c -o sparse-smooth.o
sparse-smooth.c: In function ‘sspl_apply’:
sparse-smooth.c:1673:24: warning: ‘w2’ may be used uninitialized [-Wmaybe-uninitialized]
1673 | if (!ok) { w[k] = sqrt(w2);y[k] /= w2;}
| ^~~~~~~~
sparse-smooth.c:1667:36: note: ‘w2’ was declared here
1667 | *V0s,*V0c,*V1s,*V1c,*p,*p1,*p2,w2,*xx;
| ^~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparse.c -o sparse.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tprs.c -o tprs.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o ncv.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpGLDzKw/R.INSTALL7496042ff7046/mgcv/src'
make[1]: Entering directory '/tmp/RtmpGLDzKw/R.INSTALL7496042ff7046/mgcv/src'
make[1]: Leaving directory '/tmp/RtmpGLDzKw/R.INSTALL7496042ff7046/mgcv/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mgcv/00new/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘mgcv’
finding HTML links ... done
Beta html
FFdes html
NCV html
Predict.matrix html
Predict.matrix.cr.smooth html
Predict.matrix.soap.film html
Rrank html
Sl.initial.repara html
Sl.repara html
Sl.setup html
Tweedie html
XWXd html
anova.gam html
bam html
bam.update html
bandchol html
blas.thread.test html
bug.reports.mgcv html
cSplineDes html
chol.down html
choose.k html
cnorm html
columb html
concurvity html
coxph html
coxpht html
dDeta html
dpnorm html
exclude.too.far html
extract.lme.cov html
factor.smooth html
family.mgcv html
fix.family.link html
fixDependence html
formXtViX html
formula.gam html
fs.test html
full.score html
gam html
gam.check html
gam.control html
gam.convergence html
gam.fit html
gam.fit3 html
gam.fit5.post.proc html
gam.mh html
gam.models html
gam.outer html
gam.reparam html
gam.scale html
gam.selection html
gam.side html
gam.vcomp html
gam2objective html
gamObject html
gamSim html
gamlss.etamu html
gamlss.gH html
gamm html
gammals html
gaulss html
get.var html
gevlss html
gfam html
ginla html
gumbls html
identifiability html
in.out html
inSide html
influence.gam html
initial.sp html
interpret.gam html
jagam html
k.check html
ldTweedie html
ldetS html
linear.functional.terms html
logLik.gam html
ls.size html
magic html
magic.post.proc html
mgcv-FAQ html
mgcv-package html
mgcv-parallel html
mini.roots html
missing.data html
model.matrix.gam html
mono.con html
mroot html
multinom html
mvn html
negbin html
new.name html
notExp html
notExp2 html
null.space.dimension html
ocat html
one.se.rule html
pcls html
pdIdnot html
pdTens html
pen.edf html
place.knots html
plot.gam html
polys.plot html
predict.bam html
predict.gam html
print.gam html
psum.chisq html
qq.gam html
rTweedie html
random.effects html
residuals.gam html
rig html
rmvn html
s html
scat html
sdiag html
shash html
single.index html
slanczos html
smooth.construct html
smooth.construct.ad.smooth.spec html
smooth.construct.bs.smooth.spec html
smooth.construct.cr.smooth.spec html
smooth.construct.ds.smooth.spec html
smooth.construct.fs.smooth.spec html
smooth.construct.gp.smooth.spec html
smooth.construct.mrf.smooth.spec html
smooth.construct.ps.smooth.spec html
smooth.construct.re.smooth.spec html
smooth.construct.so.smooth.spec html
smooth.construct.sos.smooth.spec html
smooth.construct.sz.smooth.spec html
smooth.construct.t2.smooth.spec html
smooth.construct.tensor.smooth.spec html
smooth.construct.tp.smooth.spec html
smooth.info html
smooth.terms html
smooth2random html
smoothCon html
sp.vcov html
spasm.construct html
step.gam html
summary.gam html
t2 html
te html
tensor.prod.model.matrix html
totalPenaltySpace html
trichol html
trind.generator html
twlss html
uniquecombs html
vcov.gam html
vis.gam html
ziP html
ziplss html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mgcv)