* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘memisc’ ...
** package ‘memisc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpKcFDYQ/R.INSTALL22cc67356e74a2/memisc/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dta-for-R.c -o dta-for-R.o
dta-for-R.c: In function ‘get_dta_file’:
dta-for-R.c:62:10: warning: unused variable ‘name’ [-Wunused-variable]
62 | SEXP name = getAttrib(s_file,install("file.name"));
| ^~~~
dta-for-R.c: In function ‘dta_read_version’:
dta-for-R.c:171:7: warning: unused variable ‘ret’ [-Wunused-variable]
171 | int ret = fread(&ds_format,1,1,dtaf->f);
| ^~~
dta-for-R.c: In function ‘dta_read_header’:
dta-for-R.c:189:7: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
189 | int ret = fread(&byteorder,1,1,dtaf->f);
| ^~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dta117-for-R.c -o dta117-for-R.o
dta117-for-R.c: In function ‘get_dta117_file’:
dta117-for-R.c:111:10: warning: unused variable ‘name’ [-Wunused-variable]
111 | SEXP name = getAttrib(s_file,install("file.name"));
| ^~~~
dta117-for-R.c: In function ‘dta117_read_int64’:
dta117-for-R.c:160:10: warning: unused variable ‘read_len’ [-Wunused-variable]
160 | size_t read_len = fread(&target,8,1,dtaf->f);
| ^~~~~~~~
dta117-for-R.c: In function ‘assert_in_file’:
dta117-for-R.c:283:7: warning: unused variable ‘ret’ [-Wunused-variable]
283 | int ret = fread(buf,1,n,f);
| ^~~
dta117-for-R.c: In function ‘dta117_read_range’:
dta117-for-R.c:321:7: warning: unused variable ‘ret’ [-Wunused-variable]
321 | int ret = fread(buf,1,len,f);
| ^~~
dta117-for-R.c: In function ‘dta117_read_header’:
dta117-for-R.c:377:7: warning: unused variable ‘l_timestamp’ [-Wunused-variable]
377 | int l_timestamp = timestamp[0];
| ^~~~~~~~~~~
dta117-for-R.c:376:7: warning: unused variable ‘l_label’ [-Wunused-variable]
376 | int l_label = label[0];
| ^~~~~~~
dta117-for-R.c:346:9: warning: unused variable ‘header_end’ [-Wunused-variable]
346 | off_t header_end = find_in_file(dtaf->f,"</header>",1,-1);
| ^~~~~~~~~~
dta117-for-R.c:340:9: warning: unused variable ‘N_end’ [-Wunused-variable]
340 | off_t N_end = find_in_file(dtaf->f,"</N>",1,-1);
| ^~~~~
dta117-for-R.c:338:9: warning: unused variable ‘K_end’ [-Wunused-variable]
338 | off_t K_end = find_in_file(dtaf->f,"</K>",1,-1);
| ^~~~~
dta117-for-R.c:332:9: warning: unused variable ‘header_start’ [-Wunused-variable]
332 | off_t header_start = find_in_file(dtaf->f,"<header>",0,-1);
| ^~~~~~~~~~~~
dta117-for-R.c: In function ‘dta117_read_map’:
dta117-for-R.c:412:9: warning: unused variable ‘map_end’ [-Wunused-variable]
412 | off_t map_end = find_in_file(dtaf->f,"</map>",1,-1);
| ^~~~~~~
dta117-for-R.c: In function ‘dta117_read_vtypes’:
dta117-for-R.c:439:9: warning: unused variable ‘vtypes_end’ [-Wunused-variable]
439 | off_t vtypes_end = find_in_file(dtaf->f,"</variable_types>",1,-1);
| ^~~~~~~~~~
dta117-for-R.c: In function ‘dta117_read_vnames’:
dta117-for-R.c:517:7: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
517 | int ret, i, n = dtaf->nvars;
| ^~~
dta117-for-R.c:515:9: warning: unused variable ‘vnames_end’ [-Wunused-variable]
515 | off_t vnames_end = find_in_file(dtaf->f,"</varnames>",1,-1);
| ^~~~~~~~~~
dta117-for-R.c: In function ‘dta117_read_sortlist’:
dta117-for-R.c:544:9: warning: unused variable ‘slist_end’ [-Wunused-variable]
544 | off_t slist_end = find_in_file(dtaf->f,"</sortlist>",1,-1);
| ^~~~~~~~~
dta117-for-R.c: In function ‘dta117_read_formats’:
dta117-for-R.c:570:7: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
570 | int ret, i, n = dtaf->nvars;
| ^~~
dta117-for-R.c:568:9: warning: unused variable ‘formats_end’ [-Wunused-variable]
568 | off_t formats_end = find_in_file(dtaf->f,"</formats>",1,-1);
| ^~~~~~~~~~~
dta117-for-R.c: In function ‘dta117_read_vlab_names’:
dta117-for-R.c:596:7: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
596 | int ret, i, n = dtaf->nvars;
| ^~~
dta117-for-R.c:594:9: warning: unused variable ‘vlab_names_end’ [-Wunused-variable]
594 | off_t vlab_names_end = find_in_file(dtaf->f,"</value_label_names>",1,-1);
| ^~~~~~~~~~~~~~
dta117-for-R.c: In function ‘dta117_read_varlabs’:
dta117-for-R.c:623:7: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
623 | int ret, i, n = dtaf->nvars;
| ^~~
dta117-for-R.c:621:9: warning: unused variable ‘varlabs_end’ [-Wunused-variable]
621 | off_t varlabs_end = find_in_file(dtaf->f,"</variable_labels>",1,-1);
| ^~~~~~~~~~~
dta117-for-R.c: In function ‘dta117_read_vallabs’:
dta117-for-R.c:648:9: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
648 | off_t ret;
| ^~~
dta117-for-R.c: In function ‘dta117_read_data’:
dta117-for-R.c:749:10: warning: variable ‘v_o’ set but not used [-Wunused-but-set-variable]
749 | double v_o;
| ^~~
dta117-for-R.c: In function ‘dta117_read_slice’:
dta117-for-R.c:863:10: warning: variable ‘v_o’ set but not used [-Wunused-but-set-variable]
863 | double v_o;
| ^~~
dta117-for-R.c: In function ‘dta117_read_chunk’:
dta117-for-R.c:1004:10: warning: variable ‘v_o’ set but not used [-Wunused-but-set-variable]
1004 | double v_o;
| ^~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dumbswap.c -o dumbswap.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init-memisc.c -o init-memisc.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c numeric_if_possible.c -o numeric_if_possible.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parsehelpers.c -o parsehelpers.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pspp-portableStream-for-R.c -o pspp-portableStream-for-R.o
pspp-portableStream-for-R.c: In function ‘fillPorStreamBuf’:
pspp-portableStream-for-R.c:337:11: warning: unused variable ‘ret’ [-Wunused-variable]
337 | int ret = fread((char *)b->buf,1,BUFSIZE,b->f);
| ^~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pspp-system-for-R.c -o pspp-system-for-R.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c readfixed.c -o readfixed.o
readfixed.c: In function ‘readfixed’:
readfixed.c:86:10: warning: variable ‘cur_len’ set but not used [-Wunused-but-set-variable]
86 | size_t cur_len;
| ^~~~~~~
readfixed.c: In function ‘readfixedslice’:
readfixed.c:183:10: warning: variable ‘cur_len’ set but not used [-Wunused-but-set-variable]
183 | size_t cur_len;
| ^~~~~~~
readfixed.c: In function ‘readfixedchunk’:
readfixed.c:266:10: warning: variable ‘cur_len’ set but not used [-Wunused-but-set-variable]
266 | size_t cur_len;
| ^~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rofile.c -o rofile.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c update_data_frame.c -o update_data_frame.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o memisc.so dta-for-R.o dta117-for-R.o dumbswap.o init-memisc.o numeric_if_possible.o parsehelpers.o pspp-portableStream-for-R.o pspp-system-for-R.o readfixed.o rofile.o update_data_frame.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpKcFDYQ/R.INSTALL22cc67356e74a2/memisc/src'
make[1]: Entering directory '/tmp/RtmpKcFDYQ/R.INSTALL22cc67356e74a2/memisc/src'
make[1]: Leaving directory '/tmp/RtmpKcFDYQ/R.INSTALL22cc67356e74a2/memisc/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-memisc/00new/memisc/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘contrasts’ in package ‘memisc’
in method for ‘description’ with signature ‘"tbl_df"’: no definition for class “tbl_df”
in method for ‘codebook’ with signature ‘"tbl_df"’: no definition for class “tbl_df”
Creating a generic function for ‘contrasts<-’ from package ‘stats’ in package ‘memisc’
Creating a generic function for ‘as.ordered’ from package ‘base’ in package ‘memisc’
Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘memisc’
Creating a generic function for ‘%in%’ from package ‘base’ in package ‘memisc’
Creating a generic function for ‘sample’ from package ‘base’ in package ‘memisc’
** help
*** installing help indices
converting help for package ‘memisc’
finding HTML links ... done
00memisc html
By html
Descriptives html
Foreach html
Groups html
Iconv html
List html
Means html
Reshape html
Sapply html
Substitute html
Table html
Write html
annotations html
applyTemplate html
as-array html
as.symbols html
assign-if html
attr-operators html
cases html
coarsen html
codebook html
codeplan html
collect html
contract html
contrasts html
dataSets html
dataset-manip html
dedup-labels html
dimrename html
duplicated-labels html
format_html html
format_html.codebook html
format_html.ftable html
format_md html
ftable-matrices html
genTable html
getSummary html
html html
importers html
items-to-vectors html
items html
labels html
measurement-autolevel html
measurement html
memisc-deprecated html
mtable-format-delim html
mtable-format-html html
mtable-format-latex html
mtable-format-print html
mtable html
neg2mis html
nin html
percent html
percentages html
query html
recode html
relabel html
rename html
reorder.array html
retain html
reversed html
sample-methods html
sort-methods html
stats-conveniences html
styles html
tibbles html
toDataFrame html
toLatexExtra html
trim-labels html
utility-classes html
value-filters html
view html
view_html html
wild.codes html
withVCov html
within-operators html
xapply html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (memisc)