• using R version 4.5.3 Patched (2026-03-11 r89645)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-14) 15.2.0     GNU Fortran (Debian 15.2.0-14) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘meme/DESCRIPTION’ ... OK
• this is package ‘meme’ version ‘0.2.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘meme’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [10s/12s] OK Examples with CPU (user + system) or elapsed time > 5s            user system elapsed meme_save 5.933 0.11 6.831
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [22s/25s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘meme.Rmd’ using rmarkdown  *** caught segfault *** address (nil), cause 'memory not mapped' Traceback:  1: grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y, resolveHJust(x$just, x$hjust), resolveVJust(x$just, x$vjust), x$rot, x$check.overlap)  2: drawDetails.text(x, recording = FALSE)  3: drawDetails(x, recording = FALSE)  4: drawGrob(x)  5: recordGraphics(drawGrob(x), list(x = x), getNamespace("grid"))  6: grid.draw.grob(x$children[[i]], recording = FALSE)  7: grid.draw(x$children[[i]], recording = FALSE)  8: drawGTree(x)  9: recordGraphics(drawGTree(x), list(x = x), getNamespace("grid")) 10: grid.draw.gTree(X[[i]], ...) 11: FUN(X[[i]], ...) 12: lapply(x, grid.draw) 13: drawGList(x) 14: recordGraphics(drawGList(x), list(x = x), getNamespace("grid")) 15: grid.draw.gList(grob) 16: grid.draw(grob) 17: print.meme(x) 18: print(x) 19: normal_print(x) 20: knit_print.default(x, ...) 21: knit_print(x, ...) 22: withVisible(knit_print(x, ...)) 23: fun(x, options = options) 24: handler$value(value, visible) 25: handle_value(handler, value, visible, envir) 26: withVisible(handle_value(handler, value, visible, envir)) 27: watcher$print_value(ev$value, ev$visible, envir) 28: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)}) 29: eval(call) 30: eval(call) 31: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers) 32: doWithOneRestart(return(expr), restart) 33: withOneRestart(expr, restarts[[1L]]) 34: withRestartList(expr, restarts[-nr]) 35: doWithOneRestart(return(expr), restart) 36: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 37: withRestartList(expr, restarts) 38: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE) 39: evaluate::evaluate(...) 40: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) 41: in_dir(input_dir(), expr) 42: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) 43: eng_r(options) 44: block_exec(params) 45: call_block(x) 46: process_group(group) 47: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }) 48: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())) 49: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) 50: process_file(text, output) 51: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 52: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) 53: vweave_rmarkdown(...) 54: engine$weave(file, quiet = quiet, encoding = enc) 55: doTryCatch(return(expr), name, parentenv, handler) 56: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 57: tryCatchList(expr, classes, parentenv, handlers) 58: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) 59: tools::buildVignettes(dir = "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/meme.Rcheck/vign_test/meme", skip = TRUE, ser_elibs = "/home/hornik/tmp/scratch/Rtmpdy07dG/file306c764d18a6af.rds") An irrecoverable exception occurred. R is aborting now ... Segmentation fault
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR