- using R version 4.6.1 Patched (2026-07-27 r90311)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.3.0-1) 15.3.0
GNU Fortran (Debian 15.3.0-1) 15.3.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-07-29 15:35:01 UTC
- checking for file ‘medicalcoder/DESCRIPTION’ ... OK
- this is package ‘medicalcoder’ version ‘0.9.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘medicalcoder’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [10s/13s] OK
- checking whether the package can be loaded with stated dependencies ... [10s/13s] OK
- checking whether the package can be unloaded cleanly ... [9s/11s] OK
- checking whether the namespace can be loaded with stated dependencies ... [9s/11s] OK
- checking whether the namespace can be unloaded cleanly ... [9s/10s] OK
- checking loading without being on the library search path ... [9s/13s] OK
- checking whether startup messages can be suppressed ... [9s/12s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [46s/58s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [27s/31s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
comorbidities 6.722 0.138 7.927
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [479s/594s] OK
Running ‘test-asserts.R’ [24s/28s]
Running ‘test-charlson.R’ [33s/39s]
Running ‘test-comorbidities.R’ [11s/15s]
Running ‘test-data-frame-tools.R’ [11s/14s]
Running ‘test-elixhauser-example.R’ [11s/13s]
Running ‘test-elixhauser-poa-na.R’ [12s/16s]
Running ‘test-elixhauser-sas-poa.R’ [11s/14s]
Running ‘test-elixhauser.R’ [9s/12s]
Running ‘test-icd_compact_to_full.R’ [10s/13s]
Running ‘test-internal-data.R’ [32s/40s]
Running ‘test-is_icd.R’ [25s/28s]
Running ‘test-locked-bindings.R’ [20s/28s]
Running ‘test-longitudinal-comorbidities.R’ [20s/27s]
Running ‘test-longitudinal-pccc-v3.1.R’ [11s/16s]
Running ‘test-lookup_icd_codes.R’ [13s/17s]
Running ‘test-modified-comorbidities-methods.R’ [26s/33s]
Running ‘test-pccc-deltas.R’ [26s/30s]
Running ‘test-pccc.R’ [25s/30s]
Running ‘test-poa-in-cumulative.R’ [11s/13s]
Running ‘test-precomputed-vs-regex.R’ [11s/15s]
Running ‘test-primarydx.R’ [11s/16s]
Running ‘test-summary-charlson.R’ [16s/19s]
Running ‘test-summary-elixhauser.R’ [13s/16s]
Running ‘test-summary-pccc-subconditions.R’ [13s/15s]
Running ‘test-summary-pccc.R’ [16s/17s]
Running ‘test-tibble-datatable.R’ [21s/23s]
Running ‘test-vs-ahrq.R’ [12s/14s]
Running ‘test-vs-pccc_1.0.7.R’ [15s/18s]
Running ‘test-zero-row-inputs.R’ [11s/13s]
Running ‘utilities.R’ [0s/0s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [111s/135s] OK
- checking PDF version of manual ... [5s/6s] OK
- checking HTML version of manual ... [2s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK