• using R version 4.5.2 Patched (2026-01-31 r89374)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘mde/DESCRIPTION’ ... OK
• this is package ‘mde’ version ‘0.3.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mde’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/10s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] ERROR Running examples in ‘mde-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: drop_all_na > ### Title: Drop columns for which all values are NA > ### Aliases: drop_all_na > > ### ** Examples > > test <- data.frame(ID= c("A","A","B","A","B"), Vals = c(rep(NA,4),2)) > test2 <- data.frame(ID= c("A","A","B","A","B"), Vals = rep(NA, 5)) > # drop columns where all values are NA > drop_all_na(test2)   ID 1 A 2 A 3 B 4 A 5 B > # drop NAs only if all are NA for a given group, drops group too. > drop_all_na(test, "ID") Error in `dplyr::filter()`: ℹ In argument: `dplyr::across(everything(), ~!all_na(.))`. ℹ In group 1: `ID = "A"`. Caused by error: ! `..1` must be a logical vector, not a <tbl_df/tbl/data.frame> object. ℹ If you used `across()` to generate this data frame, please use `if_any()` or   `if_all()` instead. Backtrace:      ▆   1. ├─mde::drop_all_na(test, "ID")   2. ├─mde:::drop_all_na.data.frame(test, "ID")   3. │ └─... %>% dplyr::ungroup()   4. ├─dplyr::ungroup(.)   5. ├─dplyr::filter(., dplyr::across(everything(), ~!all_na(.)))   6. ├─dplyr:::filter.data.frame(., dplyr::across(everything(), ~!all_na(.)))   7. │ └─dplyr:::filter_impl(...)   8. │ └─dplyr:::filter_rows(...)   9. │ └─dplyr:::filter_eval(...)  10. │ ├─base::withCallingHandlers(...)  11. │ └─mask$eval_all_filter(dots_expanded, invert, env_filter)  12. │ └─dplyr (local) eval()  13. ├─dplyr:::dplyr_internal_error(...)  14. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)  15. │ └─rlang:::signal_abort(cnd, .file)  16. │ └─base::signalCondition(cnd)  17. └─dplyr (local) `<fn>`(`<dpl:::__>`)  18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [6s/8s] ERROR   Running ‘testthat.R’ [6s/7s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(mde)   Welcome to mde. This is mde version 0.3.2.    Please file issues and feedback at https://www.github.com/Nelson-Gon/mde/issues   Turn this message off using 'suppressPackageStartupMessages(library(mde))'    Happy Exploration :)   >   > test_check("mde")   Saving _problems/test_drop_all_na-16.R   Saving _problems/test_drop_na_if-39.R   Dropped 2 rows.   Dropped 2 rows.   Dropped 2 rows.   [ FAIL 2 | WARN 4 | SKIP 15 | PASS 105 ]      ══ Skipped tests (15) ══════════════════════════════════════════════════════════   • On CRAN (15): 'test_custom_na_recode.R:1:1', 'test_dict_recode.R:1:1',     'test_drop_na_at.R:1:1', 'test_drop_row_if.R:1:1',     'test_get_na_counts.R:1:1', 'test_na_summary.R:1:1',     'test_percent_missing.R:1:1', 'test_recode_as_na.R:1:1',     'test_recode_as_na_for.R:1:1', 'test_recode_as_na_if.R:1:1',     'test_recode_as_na_str.R:21:1', 'test_recode_as_value.R:1:1',     'test_recode_na_as.R:1:1', 'test_recode_na_if.R:2:1',     'test_sorting_missingness.R:1:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_drop_all_na.R:16:13'): drop_all_na errors on absent columns ────   Error in `dplyr::filter(., dplyr::across(everything(), ~!all_na(.)))`: i In argument: `dplyr::across(everything(), ~!all_na(.))`.   i In group 1: `ID = "A"`.   Caused by error:   ! `..1` must be a logical vector, not a <tbl_df/tbl/data.frame> object.   i If you used `across()` to generate this data frame, please use `if_any()` or `if_all()` instead.   Backtrace:        ▆     1. ├─testthat::expect_equal(...) at test_drop_all_na.R:16:13     2. │ └─testthat::quasi_label(enquo(object), label)     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. ├─base::nrow(drop_all_na(test, grouping_cols = "ID"))     5. ├─mde::drop_all_na(test, grouping_cols = "ID")     6. ├─mde:::drop_all_na.data.frame(test, grouping_cols = "ID")     7. │ └─... %>% dplyr::ungroup()     8. ├─dplyr::ungroup(.)     9. ├─dplyr::filter(., dplyr::across(everything(), ~!all_na(.)))    10. ├─dplyr:::filter.data.frame(., dplyr::across(everything(), ~!all_na(.)))    11. │ └─dplyr:::filter_impl(...)    12. │ └─dplyr:::filter_rows(...)    13. │ └─dplyr:::filter_eval(...)    14. │ ├─base::withCallingHandlers(...)    15. │ └─mask$eval_all_filter(dots_expanded, invert, env_filter)    16. │ └─dplyr (local) eval()    17. ├─dplyr:::dplyr_internal_error(...)    18. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)    19. │ └─rlang:::signal_abort(cnd, .file)    20. │ └─base::signalCondition(cnd)    21. └─dplyr (local) `<fn>`(`<dpl:::__>`)    22. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)   ── Error ('test_drop_na_if.R:37:15'): drop_na_if errors as expected ────────────   Error in `dplyr::filter(., dplyr::across(dplyr::everything(), ~!switches(mean(is.na(.)) * 100, sign = sign, percent_na = percent_na)))`: i In argument: `dplyr::across(...)`.   i In group 1: `ID = "A"`.   Caused by error:   ! `..1` must be a logical vector, not a <tbl_df/tbl/data.frame> object.   i If you used `across()` to generate this data frame, please use `if_any()` or `if_all()` instead.   Backtrace:        ▆     1. ├─mde::drop_na_if(grouped_drop, percent_na = 67, grouping_cols = "ID") at test_drop_na_if.R:37:15     2. ├─mde:::drop_na_if.data.frame(grouped_drop, percent_na = 67, grouping_cols = "ID")     3. │ └─... %>% dplyr::ungroup()     4. ├─dplyr::ungroup(.)     5. ├─dplyr::filter(...)     6. ├─dplyr:::filter.data.frame(...)     7. │ └─dplyr:::filter_impl(...)     8. │ └─dplyr:::filter_rows(...)     9. │ └─dplyr:::filter_eval(...)    10. │ ├─base::withCallingHandlers(...)    11. │ └─mask$eval_all_filter(dots_expanded, invert, env_filter)    12. │ └─dplyr (local) eval()    13. ├─dplyr:::dplyr_internal_error(...)    14. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)    15. │ └─rlang:::signal_abort(cnd, .file)    16. │ └─base::signalCondition(cnd)    17. └─dplyr (local) `<fn>`(`<dpl:::__>`)    18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)      [ FAIL 2 | WARN 4 | SKIP 15 | PASS 105 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [10s/13s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘mde_vignette.rmd’ using rmarkdown Quitting from mde_vignette.rmd:499-507 [unnamed-chunk-45] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `dplyr::filter()`: ℹ In argument: `dplyr::across(...)`. ℹ In group 1: `ID = "A"`. Caused by error: ! `..1` must be a logical vector, not a <tbl_df/tbl/data.frame> object. ℹ If you used `across()` to generate this data frame, please use `if_any()` or   `if_all()` instead. --- Backtrace:      ▆   1. ├─mde::drop_na_if(...)   2. ├─mde:::drop_na_if.data.frame(...)   3. │ └─... %>% dplyr::ungroup()   4. ├─dplyr::ungroup(.)   5. ├─dplyr::filter(...)   6. ├─dplyr:::filter.data.frame(...)   7. │ └─dplyr:::filter_impl(...)   8. │ └─dplyr:::filter_rows(...)   9. │ └─dplyr:::filter_eval(...)  10. │ ├─base::withCallingHandlers(...)  11. │ └─mask$eval_all_filter(dots_expanded, invert, env_filter)  12. │ └─dplyr (local) eval()  13. └─dplyr:::dplyr_internal_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'mde_vignette.rmd' failed with diagnostics: ℹ In argument: `dplyr::across(...)`. ℹ In group 1: `ID = "A"`. Caused by error: ! `..1` must be a logical vector, not a <tbl_df/tbl/data.frame> object. ℹ If you used `across()` to generate this data frame, please use `if_any()` or   `if_all()` instead. --- failed re-building ‘mde_vignette.rmd’ --- re-building ‘missingness.rmd’ using rmarkdown --- finished re-building ‘missingness.rmd’ --- re-building ‘recoding.rmd’ using rmarkdown Quitting from recoding.rmd:300-308 [unnamed-chunk-25] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `dplyr::filter()`: ℹ In argument: `dplyr::across(...)`. ℹ In group 1: `ID = "A"`. Caused by error: ! `..1` must be a logical vector, not a <tbl_df/tbl/data.frame> object. ℹ If you used `across()` to generate this data frame, please use `if_any()` or   `if_all()` instead. --- Backtrace:      ▆   1. ├─mde::drop_na_if(...)   2. ├─mde:::drop_na_if.data.frame(...)   3. │ └─... %>% dplyr::ungroup()   4. ├─dplyr::ungroup(.)   5. ├─dplyr::filter(...)   6. ├─dplyr:::filter.data.frame(...)   7. │ └─dplyr:::filter_impl(...)   8. │ └─dplyr:::filter_rows(...)   9. │ └─dplyr:::filter_eval(...)  10. │ ├─base::withCallingHandlers(...)  11. │ └─mask$eval_all_filter(dots_expanded, invert, env_filter)  12. │ └─dplyr (local) eval()  13. └─dplyr:::dplyr_internal_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'recoding.rmd' failed with diagnostics: ℹ In argument: `dplyr::across(...)`. ℹ In group 1: `ID = "A"`. Caused by error: ! `..1` must be a logical vector, not a <tbl_df/tbl/data.frame> object. ℹ If you used `across()` to generate this data frame, please use `if_any()` or   `if_all()` instead. --- failed re-building ‘recoding.rmd’ SUMMARY: processing the following files failed:   ‘mde_vignette.rmd’ ‘recoding.rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 ERRORs