* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘manureshed’ ...
** this is package ‘manureshed’ version ‘0.1.0’
** package ‘manureshed’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘manureshed’
    finding HTML links ... done
    CONUS_STATES                            html  
    KG_TO_TONS                              html  
    LBS_TO_KG                               html  
    LBS_TO_TONS                             html  
    MANURESHED_CRS                          html  
    P2O5_TO_P                               html  
    add_centroid_coordinates                html  
    add_texas_huc8                          html  
    agri_classify_complete                  html  
    agri_classify_complete_custom           html  
    agri_classify_nitrogen                  html  
    agri_classify_nitrogen_custom           html  
    agri_classify_phosphorus                html  
    agri_classify_phosphorus_custom         html  
    agri_process_nugis                      html  
    batch_analysis_enhanced                 html  
    batch_analysis_parallel                 html  
    batch_analysis_years                    html  
    benchmark_analysis                      html  
    calculate_cropland_threshold            html  
    calculate_transition_probabilities      html  
    check_builtin_data                      html  
    citation_info                           html  
    clean_category_names                    html  
    clean_text                              html  
    clear_data_cache                        html  
    compare_analyses                        html  
    convert_load_units                      html  
    create_analysis_report                  html  
    create_batch_summary_report             html  
    create_classification_summary           html  
    create_classification_trend_plot        html  
    create_comprehensive_comparisons        html  
    create_network_plot                     html  
    create_stacked_area_plot                html  
    create_year_comparison_plots            html  
    create_yoy_change_plot                  html  
    data_sources                            html  
    dot-onAttach                            html  
    dot-package_info                        html  
    download_all_data                       html  
    download_osf_data                       html  
    export_for_gis                          html  
    export_for_policy                       html  
    export_for_publication                  html  
    extract_trend_data                      html  
    filter_by_state                         html  
    format_huc8                             html  
    generate_report_content                 html  
    get_cropland_threshold                  html  
    get_nutrient_colors                     html  
    get_state_boundaries                    html  
    get_state_fips                          html  
    health_check                            html  
    integrate_complete                      html  
    integrate_wwtp_agricultural             html  
    list_available_years                    html  
    load_builtin_boundaries                 html  
    load_builtin_nugis                      html  
    load_builtin_wwtp                       html  
    load_texas_huc8_boundaries              html  
    load_texas_huc8_data                    html  
    load_user_wwtp                          html  
    manureshed                              html  
    map_agricultural_classification         html  
    map_wwtp_columns                        html  
    map_wwtp_influence                      html  
    map_wwtp_points                         html  
    plot_absolute_changes                   html  
    plot_before_after_comparison            html  
    plot_impact_ratios                      html  
    quick_analysis                          html  
    quick_check                             html  
    quick_state_analysis                    html  
    run_builtin_analysis                    html  
    run_state_analysis                      html  
    save_analysis_summary                   html  
    save_centroid_data                      html  
    save_plot                               html  
    save_spatial_data                       html  
    save_transition_matrix                  html  
    summarize_results                       html  
    test_osf_connection                     html  
    validate_columns                        html  
    wwtp_aggregate_by_boundaries            html  
    wwtp_classify_sources                   html  
    wwtp_clean_data                         html  
    wwtp_filter_positive_loads              html  
    wwtp_process_complete                   html  
    wwtp_to_spatial                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (manureshed)