• using R version 4.5.2 Patched (2026-01-31 r89374)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘mantis/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘mantis’ version ‘1.0.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mantis’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [41s/60s] ERROR   Running ‘testthat.R’ [41s/59s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(mantis)   >   > test_check("mantis")   Saving _problems/test-plots-interactive-21.R   Saving _problems/test-plots-interactive-44.R   Saving _problems/test-prepare-25.R   [ FAIL 3 | WARN 3 | SKIP 3 | PASS 485 ]      ══ Skipped tests (3) ═══════════════════════════════════════════════════════════   • On CRAN (3): 'test-plots-static.R:1:1', 'test-plots-static.R:27:1',     'test-plots-static.R:53:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-plots-interactive.R:17:3'): output_table_interactive() avoids min/max warnings when all values are NA ──   Expected `output_table_interactive(...)` not to throw any warnings.   Actually got a <rlang_warning> with message:     There was 1 warning in `dplyr::mutate()`.     i In argument: `value_for_history = dplyr::case_when(...)`.     i In group 1: `item.item = "na"`.     Caused by warning:     ! Calling `case_when()` with size 1 LHS inputs and size >1 RHS inputs was deprecated in dplyr 1.2.0.     i This `case_when()` statement can result in subtle silent bugs and is very inefficient.            Please use a series of if statements instead:            ```       # Previously       case_when(scalar_lhs1 ~ rhs1, scalar_lhs2 ~ rhs2, .default = default)            # Now       if (scalar_lhs1) {         rhs1       } else if (scalar_lhs2) {         rhs2       } else {         default       }       ```   ── Failure ('test-plots-interactive.R:40:3'): output_table_interactive() avoids min/max warnings when all deltas are NA ──   Expected `output_table_interactive(...)` not to throw any warnings.   Actually got a <rlang_warning> with message:     There was 1 warning in `dplyr::mutate()`.     i In argument: `value_for_history = dplyr::case_when(...)`.     i In group 1: `item.item = "sparse"`.     Caused by warning:     ! Calling `case_when()` with size 1 LHS inputs and size >1 RHS inputs was deprecated in dplyr 1.2.0.     i This `case_when()` statement can result in subtle silent bugs and is very inefficient.            Please use a series of if statements instead:            ```       # Previously       case_when(scalar_lhs1 ~ rhs1, scalar_lhs2 ~ rhs2, .default = default)            # Now       if (scalar_lhs1) {         rhs1       } else if (scalar_lhs2) {         rhs2       } else {         default       }       ```   ── Failure ('test-prepare.R:23:3'): prepare_table() avoids min/max warnings when all values in a group are NA ──   Expected `prepare_table(prepared_df, inputspec = inputspec)` not to throw any warnings.   Actually got a <rlang_warning> with message:     There were 2 warnings in `dplyr::mutate()`.     The first warning was:     i In argument: `value_for_history = dplyr::case_when(...)`.     i In group 1: `item.item = "na"`.     Caused by warning:     ! Calling `case_when()` with size 1 LHS inputs and size >1 RHS inputs was deprecated in dplyr 1.2.0.     i This `case_when()` statement can result in subtle silent bugs and is very inefficient.            Please use a series of if statements instead:            ```       # Previously       case_when(scalar_lhs1 ~ rhs1, scalar_lhs2 ~ rhs2, .default = default)            # Now       if (scalar_lhs1) {         rhs1       } else if (scalar_lhs2) {         rhs2       } else {         default       }       ```     i Run `dplyr::last_dplyr_warnings()` to see the 1 remaining warning.      [ FAIL 3 | WARN 3 | SKIP 3 | PASS 485 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [6s/8s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR