* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘lsbclust’ ...
** package ‘lsbclust’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpRbl1GA/R.INSTALL32e40835a17924/lsbclust/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ClustMeans.cpp -o ClustMeans.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c KMeansW.cpp -o KMeansW.o
KMeansW.cpp: In function ‘Rcpp::List AssignCluster(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericMatrix, int)’:
KMeansW.cpp:115:26: warning: ‘minLossInd’ may be used uninitialized [-Wmaybe-uninitialized]
115 | cm[i] = minLossInd + 1; // the + 1 is needed for use in R (as c++ indexes arrays from 0)
| ~~~~~~~~~~~^~~
KMeansW.cpp:80:10: note: ‘minLossInd’ was declared here
80 | int minLossInd;
| ^~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/Vector.h:54,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:40,
from KMeansW.cpp:1:
In member function ‘Rcpp::traits::r_vector_cache<RTYPE, StoragePolicy>::proxy Rcpp::traits::r_vector_cache<RTYPE, StoragePolicy>::ref(R_xlen_t) [with int RTYPE = 14; StoragePolicy = Rcpp::PreserveStorage]’,
inlined from ‘Rcpp::Vector<RTYPE, StoragePolicy>::Proxy Rcpp::Vector<RTYPE, StoragePolicy>::operator[](R_xlen_t) [with int RTYPE = 14; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/vector/Vector.h:340:60,
inlined from ‘Rcpp::List AssignCluster(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericMatrix, int)’ at KMeansW.cpp:132:45:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/vector/traits.h:46:61: warning: ‘maxLossInd’ may be used uninitialized [-Wmaybe-uninitialized]
46 | inline proxy ref(R_xlen_t i) { return start[i] ; }
| ^
KMeansW.cpp: In function ‘Rcpp::List AssignCluster(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericMatrix, int)’:
KMeansW.cpp:82:10: note: ‘maxLossInd’ was declared here
82 | int maxLossInd;
| ^~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LossMat.cpp -o LossMat.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o lsbclust.so ClustMeans.o KMeansW.o LossMat.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpRbl1GA/R.INSTALL32e40835a17924/lsbclust/src'
make[1]: Entering directory '/tmp/RtmpRbl1GA/R.INSTALL32e40835a17924/lsbclust/src'
make[1]: Leaving directory '/tmp/RtmpRbl1GA/R.INSTALL32e40835a17924/lsbclust/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-lsbclust/00new/lsbclust/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘lsbclust’
finding HTML links ... done
ClustMeans html
KMeansW html
LossMat html
T3Clusf html
akmeans html
bicomp html
carray html
cfsim html
finding level-2 HTML links ... done
cfsim.T3Clusf html
cfsim.akmeans html
cfsim.lsbclust html
cmat html
dcars html
fitted.T3Clusf html
fitted.akmeans html
fitted.lsbclust html
genproc html
indarr html
int.lsbclust html
lov html
lsbclust-package html
lsbclust html
lsbclusttoclue html
meanbiplot html
meanheatmap html
orc.lsbclust html
plot.T3Clusf html
plot.bicomp html
plot.col.kmeans html
plot.int.lsbclust html
plot.lsbclust html
plot.ovl.kmeans html
plot.row.kmeans html
plot.step.lsbclust html
print.lsbclust html
rlsbclust html
rorth html
sim_lsbclust html
simsv html
step.lsbclust html
summary.int.lsbclust html
summary.lsbclust html
supermarkets html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lsbclust)