* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘lotri’ ...
** this is package ‘lotri’ version ‘1.0.2’
** package ‘lotri’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-8) 14.3.0’
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNBQ0sg/R.INSTALLbe4c93efd7529/lotri/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11armadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c asLotriMat.c -o asLotriMat.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11armadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lotriBounds.c -o lotriBounds.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11armadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lotriLstToMat.c -o lotriLstToMat.o
In file included from lotriLstToMat.c:1:
In function ‘setStrElt’,
inlined from ‘lotriLstToMatFillInMatrixBand’ at lotriLstToMat.h:97:4,
inlined from ‘lotriLstToMatFillInFullMatrix’ at lotriLstToMat.h:131:5,
inlined from ‘_lotriLstToMat’ at lotriLstToMat.c:178:3:
matlist.h:123:5: warning: ‘colnames’ may be used uninitialized [-Wmaybe-uninitialized]
123 | SET_STRING_ELT(retN, curBand+j, STRING_ELT(colnames, j));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from matlist.h:186:
lotriLstToMat.h: In function ‘_lotriLstToMat’:
lotriLstToMat.h:108:25: note: ‘colnames’ was declared here
108 | SEXP sameS, dimnames, colnames, curFixed = R_NilValue;
| ^~~~~~~~
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11armadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lotriNest.c -o lotriNest.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11armadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lotriProp.c -o lotriProp.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11armadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matlist.c -o matlist.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11armadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nearPD.cpp -o nearPD.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11armadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcm.cpp -o rcm.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o lotri.so asLotriMat.o lotriBounds.o lotriLstToMat.o lotriNest.o lotriProp.o matlist.o nearPD.o rcm.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNBQ0sg/R.INSTALLbe4c93efd7529/lotri/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNBQ0sg/R.INSTALLbe4c93efd7529/lotri/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNBQ0sg/R.INSTALLbe4c93efd7529/lotri/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-lotri/00new/lotri/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘lotri’
finding HTML links ... done
as.lotri html
dot-lotriPointers html
lotri html
lotriAsExpression html
lotriDataFrameToLotriExpression html
lotriEst html
lotriIsBlockMat html
lotriMat html
lotriMatInv html
lotriNearPD html
lotriSep html
rcm html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lotri)