* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘longevity’ ...
** package ‘longevity’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/RtmpvARO2n/R.INSTALL265fe833e2c060/longevity/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c npmle.cpp -o npmle.o
npmle.cpp: In function ‘Rcpp::List turnbullem(arma::dmat, arma::dvec, arma::dvec, arma::dvec, arma::dvec, arma::dvec, bool, bool, double, double, arma::uword)’:
npmle.cpp:257:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
257 | while(!convergence && niter < maxiter){
| ~~~~~~^~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o longevity.so RcppExports.o npmle.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpvARO2n/R.INSTALL265fe833e2c060/longevity/src'
make[1]: Entering directory '/tmp/RtmpvARO2n/R.INSTALL265fe833e2c060/longevity/src'
make[1]: Leaving directory '/tmp/RtmpvARO2n/R.INSTALL265fe833e2c060/longevity/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-longevity/00new/longevity/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘longevity’
finding HTML links ... done
beard html
beardmake html
boxcox_transfo html
check_arguments html
check_elife_dist html
conf_interv html
dot-censTruncLimits html
dot-check_surv html
dot-turnbull_em html
dot-turnbull_intervals html
dot-wecdf html
dutch html
elife html
ewsim html
exponential html
extgp html
extweibull html
fit_ditrunc_elife html
fit_elife html
gomp html
gompmake html
gpd html
gppiece html
hazard_elife html
hazard_fn_elife html
hweibull html
idlmetadata html
japanese html
japanese2 html
ks_test html
lpost_elife html
nc_score_test html
nc_test html
nll_ditrunc_elife html
nll_elife html
np_elife html
np_nll html
npsurv html
perks html
perksmake html
pextgp html
plot.elife_ecdf html
plot.elife_northropcoleman html
plot.elife_par html
plot.elife_profile html
prof_exp_scale html
prof_gp_endpt html
prof_gp_scalet html
prof_gp_shape html
r_ditrunc_elife html
r_dtrunc_elife html
r_ltrc_elife html
samp2_elife html
samp_elife html
test_ditrunc_elife html
test_elife html
tstab html
turnbull_intervals html
uq1_qqplot_elife html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘longevity’ as ‘longevity_1.0.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (longevity)