* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘longevity’ ...
** package ‘longevity’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-25) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpc4rdh5/R.INSTALL269484ae702ff/longevity/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c npmle.cpp -o npmle.o
npmle.cpp: In function ‘Rcpp::List turnbullem(arma::dmat, arma::dvec, arma::dvec, arma::dvec, arma::dvec, arma::dvec, bool, bool, double, double, arma::uword)’:
npmle.cpp:257:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  257 |   while(!convergence && niter < maxiter){
      |                         ~~~~~~^~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o longevity.so RcppExports.o npmle.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpc4rdh5/R.INSTALL269484ae702ff/longevity/src'
make[1]: Entering directory '/tmp/Rtmpc4rdh5/R.INSTALL269484ae702ff/longevity/src'
make[1]: Leaving directory '/tmp/Rtmpc4rdh5/R.INSTALL269484ae702ff/longevity/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-longevity/00new/longevity/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘longevity’
    finding HTML links ... done
    beard                                   html  
    beardmake                               html  
    boxcox_transfo                          html  
    check_arguments                         html  
    check_elife_dist                        html  
    conf_interv                             html  
    dot-censTruncLimits                     html  
    dot-check_surv                          html  
    dot-turnbull_em                         html  
    dot-turnbull_intervals                  html  
    dot-wecdf                               html  
    dutch                                   html  
    elife                                   html  
    ewsim                                   html  
    exponential                             html  
    extgp                                   html  
    extweibull                              html  
    fit_ditrunc_elife                       html  
    fit_elife                               html  
    gomp                                    html  
    gompmake                                html  
    gpd                                     html  
    gppiece                                 html  
    hazard_elife                            html  
    hazard_fn_elife                         html  
    hweibull                                html  
    idlmetadata                             html  
    japanese                                html  
    japanese2                               html  
    ks_test                                 html  
    lpost_elife                             html  
    nc_score_test                           html  
    nc_test                                 html  
    nll_ditrunc_elife                       html  
    nll_elife                               html  
    np_elife                                html  
    np_nll                                  html  
    npsurv                                  html  
    perks                                   html  
    perksmake                               html  
    pextgp                                  html  
    plot.elife_ecdf                         html  
    plot.elife_northropcoleman              html  
    plot.elife_par                          html  
    plot.elife_profile                      html  
    prof_exp_scale                          html  
    prof_gp_endpt                           html  
    prof_gp_scalet                          html  
    prof_gp_shape                           html  
    r_ditrunc_elife                         html  
    r_dtrunc_elife                          html  
    r_ltrc_elife                            html  
    samp2_elife                             html  
    samp_elife                              html  
    test_ditrunc_elife                      html  
    test_elife                              html  
    tstab                                   html  
    turnbull_intervals                      html  
    uq1_qqplot_elife                        html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘longevity’ as ‘longevity_1.0.0_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (longevity)