* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘logicDT’ ...
** this is package ‘logicDT’ version ‘1.0.5’
** package ‘logicDT’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3dFooy/R.INSTALLdd3f0283cfee3/logicDT/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c gxe-test.c -o gxe-test.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c logicDT-init.c -o logicDT-init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c logicDT.c -o logicDT.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pruning.c -o pruning.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sa-greedy.c -o sa-greedy.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o logicDT.so gxe-test.o logicDT-init.o logicDT.o pruning.o sa-greedy.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3dFooy/R.INSTALLdd3f0283cfee3/logicDT/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3dFooy/R.INSTALLdd3f0283cfee3/logicDT/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3dFooy/R.INSTALLdd3f0283cfee3/logicDT/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-logicDT/00new/logicDT/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘logicDT’
    finding HTML links ... done
    bestBoostingIter                        html  
    calcAUC                                 html  
    calcBrier                               html  
    calcDev                                 html  
    calcMSE                                 html  
    calcMis                                 html  
    calcNCE                                 html  
    calcNRMSE                               html  
    cooling.schedule                        html  
    cv.prune                                html  
    fit4plModel                             html  
    fitLinearBoostingModel                  html  
    fitLinearLogicModel                     html  
    fitLinearModel                          html  
    get.ideal.penalty                       html  
    getDesignMatrix                         html  
    gxe.test                                html  
    gxe.test.boosting                       html  
    importance.test.boosting                html  
    logicDT                                 html  
    logicDT.bagging                         html  
    logicDT.boosting                        html  
    partial.predict                         html  
    plot.logicDT                            html  
    plot.vim                                html  
    predict.4pl                             html  
    predict.linear                          html  
    predict.linear.logic                    html  
    predict.logicDT                         html  
    prune                                   html  
    prune.path                              html  
    refitTrees                              html  
    splitSNPs                               html  
    tree.control                            html  
    vim                                     html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (logicDT)