* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘logicDT’ ...
** package ‘logicDT’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpFAHm1R/R.INSTALL8f0672385f51/logicDT/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gxe-test.c -o gxe-test.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logicDT-init.c -o logicDT-init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logicDT.c -o logicDT.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/R.h:78,
from logicDT.h:6,
from logicDT.c:1:
logicDT.c: In function ‘fitPETIntern’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/R_ext/RS.h:53:30: warning: ‘best_N_L’ may be used uninitialized [-Wmaybe-uninitialized]
53 | #define Calloc(n, t) (t *) R_chk_calloc( (R_SIZE_T) (n), sizeof(t) )
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
logicDT.c:1094:34: note: in expansion of macro ‘Calloc’
1094 | left_child->obs_ind = (int*) Calloc(best_N_L, int); right_child->obs_ind = (int*) Calloc((N_k - best_N_L), int);
| ^~~~~~
logicDT.c:772:7: note: ‘best_N_L’ was declared here
772 | int best_N_L;
| ^~~~~~~~
logicDT.c:1096:26: warning: ‘best_imp_L’ may be used uninitialized [-Wmaybe-uninitialized]
1096 | left_child->impurity = best_imp_L; right_child->impurity = best_imp_R;
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
logicDT.c:775:10: note: ‘best_imp_L’ was declared here
775 | double best_imp_L, best_imp_R;
| ^~~~~~~~~~
logicDT.c:1096:62: warning: ‘best_imp_R’ may be used uninitialized [-Wmaybe-uninitialized]
1096 | left_child->impurity = best_imp_L; right_child->impurity = best_imp_R;
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
logicDT.c:775:22: note: ‘best_imp_R’ was declared here
775 | double best_imp_L, best_imp_R;
| ^~~~~~~~~~
logicDT.c:1097:22: warning: ‘best_pred_L’ may be used uninitialized [-Wmaybe-uninitialized]
1097 | left_child->pred = best_pred_L; right_child->pred = best_pred_R;
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
logicDT.c:777:10: note: ‘best_pred_L’ was declared here
777 | double best_pred_L, best_pred_R;
| ^~~~~~~~~~~
logicDT.c:1097:55: warning: ‘best_pred_R’ may be used uninitialized [-Wmaybe-uninitialized]
1097 | left_child->pred = best_pred_L; right_child->pred = best_pred_R;
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
logicDT.c:777:23: note: ‘best_pred_R’ was declared here
777 | double best_pred_L, best_pred_R;
| ^~~~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pruning.c -o pruning.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sa-greedy.c -o sa-greedy.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o logicDT.so gxe-test.o logicDT-init.o logicDT.o pruning.o sa-greedy.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpFAHm1R/R.INSTALL8f0672385f51/logicDT/src'
make[1]: Entering directory '/tmp/RtmpFAHm1R/R.INSTALL8f0672385f51/logicDT/src'
make[1]: Leaving directory '/tmp/RtmpFAHm1R/R.INSTALL8f0672385f51/logicDT/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-logicDT/00new/logicDT/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘logicDT’
finding HTML links ... done
bestBoostingIter html
calcAUC html
calcBrier html
calcDev html
calcMSE html
calcMis html
calcNCE html
calcNRMSE html
cooling.schedule html
cv.prune html
fit4plModel html
fitLinearBoostingModel html
fitLinearLogicModel html
fitLinearModel html
get.ideal.penalty html
getDesignMatrix html
gxe.test html
gxe.test.boosting html
importance.test.boosting html
logicDT html
logicDT.bagging html
logicDT.boosting html
partial.predict html
plot.logicDT html
plot.vim html
predict.4pl html
predict.linear html
predict.linear.logic html
predict.logicDT html
prune html
prune.path html
refitTrees html
splitSNPs html
tree.control html
vim html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (logicDT)